Are you downloading the ³BAI² index file, as well?

That might be the problem.

Best,

Ann


On 4/19/11 11:00 PM, "Edward Dudley" <egd...@psu.edu> wrote:

> Hi -
> 
> I have a set of 454 reads that have been trimmed and converted to BAM format
> using Galaxy, and I can visualize the alignment with E. coli genomes using the
> UCSC browser.  Problem is, I'd like to display the alignment in Artemis, but
> Artemis doesn't seem to want to read the .BAM file downloaded from Galaxy; I
> can import my genome sequence but when trying to import the BAM a blank window
> with "message" in the header keeps popping up.  Anyone else tried to do this,
> and is there something about the Galaxy BAM files that Artemis doesn't like?
> 
> Thanks.
> 
> Ed
> 
> 
> 
> 
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-- 
Ann Loraine
Associate Professor
Dept. of Bioinformatics and Genomics, UNCC
North Carolina Research Campus
600 Laureate Way
Kannapolis, NC 28081
704-250-5750
www.transvar.org


___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

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