Are you downloading the ³BAI² index file, as well? That might be the problem.
Best, Ann On 4/19/11 11:00 PM, "Edward Dudley" <[email protected]> wrote: > Hi - > > I have a set of 454 reads that have been trimmed and converted to BAM format > using Galaxy, and I can visualize the alignment with E. coli genomes using the > UCSC browser. Problem is, I'd like to display the alignment in Artemis, but > Artemis doesn't seem to want to read the .BAM file downloaded from Galaxy; I > can import my genome sequence but when trying to import the BAM a blank window > with "message" in the header keeps popping up. Anyone else tried to do this, > and is there something about the Galaxy BAM files that Artemis doesn't like? > > Thanks. > > Ed > > > > > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ -- Ann Loraine Associate Professor Dept. of Bioinformatics and Genomics, UNCC North Carolina Research Campus 600 Laureate Way Kannapolis, NC 28081 704-250-5750 www.transvar.org
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
