Hi Robin,
Run the FASTQ Groomer on your datafile first, then use the result as
input to the Compute quality statistics tool. (Skip using Quality format
converter).
Hopefully this helps,
Jen
Galaxy team
On 5/3/11 2:00 AM, Robin Mjelle wrote:
Dear User,
I am trying to use the tool "Compute quality statistics
<http://main.g2.bx.psu.edu/tool_runner?tool_id=cshl_fastx_quality_statistics>"
in galaxy on Ilumina single reads. The file is 2.3 Gb, fastq format. I
have performed Quality format converter on the data set and the format
is now qualillumina. Despite of this, galaxy don't recognize any dataset
in the workflow to use as input into quality statistics.
Any idea why my dataset is not accepted as input?
Best,
Robin
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
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