Hi guys,
We are trying to load Illumina data to our local Galaxy instance. The
files are between 700 MB and 2.2 GB. Files below 2 GB load in less than
5 minutes. Files larger than 2 GB don't upload at all. We installed
Galaxy locally because we thought loading files will be faster than the
server version. Any suggestions to solve this problem is highly appreciated.
Tilahun
-----------------------
John David Osborne wrote:
I noticed that for our new Ilumina data (which generate Sanger format)
the FastQ groomer output is identical to the Ilumina FastQ input file.
I was hoping to go ahead and just use the raw FastQ files as input
(saving disk space) for computing quality statistics to look at box
plots, but it appears that the tool "Compute Quality Statistics"
appears to require that the data have been run through FastQ Groomer
first.
Is there a way to get around this and is this a bug? I assuming this
is some sort of safety measure built into this tool?
-John
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
