Hello Luciano,

This was a bug, fixed in galaxy-central yesterday: changeset 4212f675f95b . You can either pull the changeset into your local instance or wait for it to be incorporated into the next distribution (within the next few weeks).

Next time, it would be great if you would send questions like this directly to the mailing lists:
- galaxy-u...@bx.psu.edu for data/tool questions like this one
- galaxy-...@bx.psu.edu local install/technical questions


Galaxy team

On 8/3/11 4:16 PM, Luciano Cosme wrote:
Hi Jeni,
    I am sorry to bother you again. I am also running galaxy locally and
I solved all the problems so far. Now I am running cuffdiff and when I
select my data input at "SAM or BAM file of aligned RNA-Seq reads:"  I
get a red message telling me to choose the genome build for that data
set "Unspecified genome build, click the pencil icon in the history item
to set the genome build". The problem is that used a custom index since
AaegL1 is not available locally. Any thoughts how to go around it. I
will attach a ss.
Thank you .

Jennifer Jackson
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