Hi jen, I have used BOWTIE to align my RNA-seq reads to HSV2 genome; out
of 35,000,000 lines, only 621 lines left when I chose to have mapped
reads only. How can visualize these aligned reads to HSV-2 genome?

In the panel of converted SAM to BAM, I tried to use the data in
trickster, but I am not sure to how to build a HSV genome as a

I appreciate your help,


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