On Tue, Sep 6, 2011 at 9:29 PM, Peng, Tao <[email protected]> wrote: > Hi I had 3 GTF files from ensemble, UCSC and NCBI for annotation; ONLY > ensemble were recognized by GALAXY cufflinks as a GTF file although they > all have .GTF. I am NOT sure why UCSC and NCBI GTF files were seen as > GFF files? > > Thx,
I'm pretty sure Galaxy ignores the original filename extension (it will be stored on disk as *.dat once uploaded to Galaxy). If you could post the start of each file (or links to the complete files) that would be very helpful for working out why Galaxy has misidentified the GTF files as GFF. Peter ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
