Hi Jennifer, I already tried 2 weeks ago to upload my whole exome data by FTP, according to the instructions you sent below. The files are too big, it should take days for each file, and it always stops in the middle after 12 hours or so. So I gave up.
If I use Galaxy on a cloud, I can work with the files on my computer, or I will still have to upload them by ftp? I guess I will still have to upload them, so it doesn't solve my problem? Thank you for the help! Lilach 2011/9/12 Jennifer Jackson <j...@bx.psu.edu> > Hello Lilach, > > On 9/12/11 7:18 AM, Jennifer Jackson wrote: > >> Hi, >> I am a new user of Galaxy. >> I want to analyze whole human exome data with Galaxy and cannot upload >> the files (10 Gb each) to the server. >> > > If you need help uploading larger files, this prior Q/A has the details for > FTP transfer: > http://lists.bx.psu.edu/**pipermail/galaxy-user/2011-** > September/003162.html<http://lists.bx.psu.edu/pipermail/galaxy-user/2011-September/003162.html> > > Should I install Galaxy on a PC, and work in Unix environment, or there >> is a more comfortable way? >> If I should install it - what should be the computer properties, and >> where can I find the instructions for using it? I found the instructions >> for installing in Wiki, but didn't find the what computer is should be >> (RAM, HD, etc). >> > > If you still decide to use your own instance, Galaxy itself should run on > most platforms. However, there may be hardware dependencies for the 3rd > party tools you intend to incorporate and use. > http://galaxyproject.org/wiki/**Admin<http://galaxyproject.org/wiki/Admin>see > "Tools" > > A simplified alternative to hosting a local instance is the Cloudman Galaxy > option, please see: > http://galaxyproject.org/wiki/**Admin/Cloud<http://galaxyproject.org/wiki/Admin/Cloud> > http://galaxyproject.org/wiki/**Big%20Picture/Choices<http://galaxyproject.org/wiki/Big%20Picture/Choices> > > >> Thanks, >> Lilach >> > > Hopefully this helps. Going forward, please send all new questions directly > "to" the mailing list and all replies with a "reply-all" to include the > mailing list. > > Best, > > Jen > Galaxy team > > ______________________________**_____________________________ >> The Galaxy User list should be used for the discussion of >> Galaxy analysis and other features on the public server >> at usegalaxy.org. Please keep all replies on the list by >> using "reply all" in your mail client. For discussion of >> local Galaxy instances and the Galaxy source code, please >> use the Galaxy Development list: >> >> http://lists.bx.psu.edu/**listinfo/galaxy-dev<http://lists.bx.psu.edu/listinfo/galaxy-dev> >> >> To manage your subscriptions to this and other Galaxy lists, >> please use the interface at: >> >> http://lists.bx.psu.edu/ >> > > -- > Jennifer Jackson > http://usegalaxy.org > http://galaxyproject.org/**Support <http://galaxyproject.org/Support> >
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/