Can you clarify what is different between the Zv9 version of the UCSC Zebrafish
and the Zv9 version of the Ensembl Zebrafish genome ?  They both appear
to have the identical number of 1,412,464,843 nucleotides.


----- Original Message -----
From: "Sheena Scroggins" <>
Sent: Friday, November 4, 2011 2:50:13 PM
Subject: [galaxy-user] Uploading Genome from Ensembl

How do I upload the Zebrafish genome from Ensembl to my user history in Galaxy? 
I’m trying to map my RNA-Seq data using TopHat and need to map it to the 
Ensembl version of ZFv9, but Galaxy only has the UCSC version built in. The 
Ensembl version is slightly different. 



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