Alex, Thanks that worked. I was thrown off by the word concatenate, which I mistakenly thought would join reads together (reads remain separate), and by the absence of the word merge, which is used when referring to combining two BAM datasets together in Galaxy. It seems to me that the tool to combine BAM datasets, "Merge Bam Files", and the tool to combine FASTQ datasets, "Concatenate datasets" work the same but "Concatenate datasets" works on any type of dataset. Edward On Dec 27, 2011, at 11:02 AM, Bossers, Alex wrote:
> Edward, > If you just want to conacatenate the fastq files (I assume that is what you > mean) you can do that using the text manipulation tools: concatenate datasets > tail-to-head. > Good luck. > Alex > > ________________________________________ > Van: galaxy-user-boun...@lists.bx.psu.edu > [galaxy-user-boun...@lists.bx.psu.edu] namens Edward Turk [edwardt...@mac.com] > Verzonden: zaterdag 24 december 2011 3:30 > Aan: galaxy-user@lists.bx.psu.edu > Onderwerp: [galaxy-user] Merge FASTQ Databases > > Hi Galaxy Users, > > Can FASTQ Databases be merged using Galaxy? > > Thanks, > Edward > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
