On Dec 28, 2011, at 10:36 AM, Eric Guo wrote:

> Hi everyone, 
> 
> I'd like to upload my sequencing data file, 36 GB, onto galaxy. My data is on 
> a computer cluster in my institute. So I use ssh shell ftp commands to 
> connect to galaxy and upload the data(ftp> put filename). And the connection 
> appears to be fine as far as I can tell.
> 
> I tried few times. Every time the uploading is fine in the beginning. 
> However, when about 12 GB of my dataset is uploaded (according to Galaxy 
> upload file page), the upload stops, and an error message pop up in the 
> terminal on my Mac saying "a broken pipeline". 
> 
> I never had this problem before when I was using FTP programs like CyberDuck. 
> Has anyone have similar problems using ssh command lines to upload data? 
> What's the correct way to upload data from a computer cluster?
> 
> Thanks in advance for your help. 

Hi Eric,

I'm not sure what's causing the connection to die, but I'd suggest using rsync 
so at least it can be resumed.

--nate

> 
> -Eric
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___________________________________________________________
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