Hello Alicia,

Would you please share with me the history on the public Main server that you are having trouble downloading the data from? Use "Options -> Share or Publish", generate the link or add my email as a shared user, and email the link or name of the history back to me directly.


Thanks,

Jen
Galaxy team

On 1/13/12 1:28 AM, Poh Leng Chong wrote:
Hi,



I run Barcode Splitter (from public Galaxy server) and am unable to
download the text files generated by the barcode splitter, got an
error message which says '

Could not find 'FASTQ_Groomer_on_data_1__V1.txt' on the extra files
path 
/galaxy/main_pool/pool2/files/003/610/dataset_3610002_files/FASTQ_Groomer_on_data_1__V1.txt.



The run was Ok (green colour) but yet i was unable to download the
text files. Could you please advise?



Also, I wonder if you could help regarding the local Galaxy.. I used
VirtualBox to install the local copy, and installed according to the
instructions as in the website, command as "hg clone https://...."; The
setup was smooth and went OK. The problem starts when I run the local
Galaxy using real data. I could upload the files, but have problems
with the fastQC and barcode splitter, I could not proceed any further
since these two operations could not be run...The error messages are:



FastQC
  An error occurred running this job: Traceback (most recent call last):
File "/home/Desktop/galaxy-dist/tools/rgenetics/rgFastQC.py", line
141, in<module>
assert os.path.isfile(opts.executable),'##rgFastQC.py error - cannot
find executable %s' % opts.executable
AssertionError



Barcode Splitter
An error occurred running this job:
/home/Desktop/galaxy-dist/tools/fastx_toolkit/fastx_barcode_splitter_galaxy_wrapper.sh:
line 65: fastx_barcode_splitter.pl: command not found

gzip: stdout: Broken pipe



Can anyone help me please? I installed the local Galaxy but could not
proceed further. I then used the public Galaxy but could not download
the files....



Hope to hear from you. Thanks very much.



Best regards

Alicia
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
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