Hi Dannon,
I found nginx.conf at /opt/galaxy/pkg/nginx_upload_module-2.0.12/nginx.conf
It contains ..
client_max_body_size 100m;
That looks like 100 Megabyte ?? but seems to result in 1 Megabyte. Can I
set it to 10000m, or 1g ?
Can't see how to restart nginx yet.
Thanks,
Greg E
On Mon, Jan 23, 2012 at 8:18 PM, Dannon Baker <dannonba...@me.com> wrote:
> Hi Greg,
>
> This is a problem with the default client_max_body_size option in nginx
> being set far too small in the nginx.conf on the cloud AMI. It'll be fixed
> with our next AMI update, but to fix it you have to edit the nginx.conf on
> your cloud node to change the client_max_body_size to something more
> appropriate for Galaxy uploads and then restart the nginx process.
>
> You'd have to do it for every instance, unfortunately, since that section
> of the filesystem is not persisted after shutdown. As a workaround the URL
> upload will work correctly with any size file if you're able to host the
> file you want to upload somewhere local, or you could use FTP upload and
> that should also function correctly.
>
> -Dannon
>
>
> On Jan 23, 2012, at 4:09 AM, Greg Edwards wrote:
>
> > Hi,
> >
> > I'm building a Galaxy Cloud implementation, and running into a problem
> uploading data files > 1 Mbyte, or 1,048,576 bytes.
> >
> > I've started Galaxy Cloudman and a single server, all according to to
> the Wiki. I can upload fasta format files < 1048756 bytes, and general CSV
> format peptide files, and indeed junk data files built with variants of "
> jot -r -c 1030000 a z | rs -g 0 100 >junk ".
> >
> > If I upload files (via the built-in Get Data / Upload Files From Your
> Computer) that are > than approx 2^20 bytes, the upload just hangs in the
> History and never completes.
> >
> > These files upload fine to a local Galaxy server, and to Galaxy Main. On
> the Galaxy local server, they run fine with my custom proteomics code.
> Ditto on the Cloud galaxy server when the (smaller than 1 Mbtye) files
> successfully upoad.
> >
> > I can't see anthing useful in the logs, but I'm not sure which logs I
> should be looking at. I'm just looking at tyhe logs presented on the
> Cloudman admin page.
> >
> > <logs.png>
> >
> > My environment is Mac, OS X 10.6.8. My data files are terminated with
> /n, but the problem manifests the same with Windows style /r/n files.
> >
> > I'll leave it at that in the hope this is a ridiculously simple probelm
> and needs no more description ! If not, please let me know the logs I
> should look at and whatever else I should check.
> >
> > Many thanks,
> > Greg E
> >
> > --
> > Greg Edwards,
> > Port Jackson Bioinformatics
> > gedwar...@gmail.com
> >
> > ___________________________________________________________
> > The Galaxy User list should be used for the discussion of
> > Galaxy analysis and other features on the public server
> > at usegalaxy.org. Please keep all replies on the list by
> > using "reply all" in your mail client. For discussion of
> > local Galaxy instances and the Galaxy source code, please
> > use the Galaxy Development list:
> >
> > http://lists.bx.psu.edu/listinfo/galaxy-dev
> >
> > To manage your subscriptions to this and other Galaxy lists,
> > please use the interface at:
> >
> > http://lists.bx.psu.edu/
>
>
--
Greg Edwards,
Port Jackson Bioinformatics
gedwar...@gmail.com
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
