Vincent
Great question!!! And a follow up for me, is how to purge the conserved
sequences. Presently the current data set I have from "Fetch" is likely
to be 99% composed of incorrect taxon just because of conserved
sequence. So, how do you select just unique sequences (ie those that do
not have more then... say 5 hits above 99%). Any advice would be nice.
Our bioinformatic person said there was a way to do it thru blast X.
Scott
Scott Tighe
Advanced Genome Technology Lab
Vermont Cancer Center at the University of Vermont
149 Beaumont Avenue
Health Science Research Bd RM 305
Burlington Vermont USA 05405
lab 802-656-AGTC (2482)
cell 802-999-6666
On 2/29/2012 8:32 PM, Montoya, Vincent wrote:
Hello
I am a relatively new user on Galaxy and I had a question regarding "Fetching
Taxonomic Information". It is great that I can retrieve all of the hits for each
sequence, but I cannot seem to find an option to also provide how accurate of a match it
is to the given taxon. For instance, a percentage match. I can access this information
in the original file and programmatically retrieve it but, it would be nice if it came in
one package so that I can avoide those false hits that have a low percentage match. Can
you please provide me with instructions on how to best to retrieve this information
(hopefully in a single file)?
Thank you
Vincent
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___________________________________________________________
The Galaxy User list should be used for the discussion of
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using "reply all" in your mail client. For discussion of
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