Hello,

Yes, please see the "NGS:" tool groups. If you need some help getting oriented with Galaxy, this are some good starting places:


https://main.g2.bx.psu.edu/u/james/p/exercises
  - RNA-seq (if data RNA)

http://wiki.g2.bx.psu.edu/Learn/Screencasts
  - Illumina Paired Ends (if data DNA)

Best,

Jen
Galaxy team


On 4/2/12 2:29 PM, shamsher jagat wrote:
Is it possible to align FASTq reads from Illumina Hi-seq reads to human
genome in Galaxy? I see only Bowtie/ I guess next question will be how
different is Bowtie from BWA?
I want to find out sequence variations.
Thanks


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The Galaxy User list should be used for the discussion of
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at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
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