Hello,
Yes, please see the "NGS:" tool groups. If you need some help getting
oriented with Galaxy, this are some good starting places:
https://main.g2.bx.psu.edu/u/james/p/exercises
- RNA-seq (if data RNA)
http://wiki.g2.bx.psu.edu/Learn/Screencasts
- Illumina Paired Ends (if data DNA)
Best,
Jen
Galaxy team
On 4/2/12 2:29 PM, shamsher jagat wrote:
Is it possible to align FASTq reads from Illumina Hi-seq reads to human
genome in Galaxy? I see only Bowtie/ I guess next question will be how
different is Bowtie from BWA?
I want to find out sequence variations.
Thanks
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
