Hi,

Please try starting with:

    $ LC_ALL=C ./run.sh

--nate

On May 18, 2012, at 11:22 AM, Seyed Mehdi Jazayeri wrote:

> 
> Dear Sir/Madam,
> 
> I am a PhD student working on RNA-Seq as my dissertation. As a matter of fact 
> I want to do analyses of gene expressions for the sequences that I have and 
> for that I have tried to use Galaxy tools as it is one of the best platforms 
> in order to do analysis for RNA-Seq as well as others. I did all about 
> installation of Galaxy on my Mac OS 10.7 Lion but when I run the commands I 
> do not get any result from running any type of commands. And when I do run.sh 
> I will have nothing done. As a sample I send you the command I ran on my 
> system as follow
> 
> iMac-de-Biologia:galaxy-dist LabBioMol$ ./run.sh
> Traceback (most recent call last):
>   File "./scripts/paster.py", line 34, in <module>
>     command.run()
>   File 
> "/Users/LabBioMol/galaxy-python/galaxy-dist/eggs/PasteScript-1.7.3-py2.7.egg/paste/script/command.py",
>  line 84, in run
>     invoke(command, command_name, options, args[1:])
>   File 
> "/Users/LabBioMol/galaxy-python/galaxy-dist/eggs/PasteScript-1.7.3-py2.7.egg/paste/script/command.py",
>  line 123, in invoke
>     exit_code = runner.run(args)
>   File 
> "/Users/LabBioMol/galaxy-python/galaxy-dist/eggs/PasteScript-1.7.3-py2.7.egg/paste/script/command.py",
>  line 218, in run
>     result = self.command()
>   File 
> "/Users/LabBioMol/galaxy-python/galaxy-dist/eggs/PasteScript-1.7.3-py2.7.egg/paste/script/serve.py",
>  line 276, in command
>     relative_to=base, global_conf=vars)
>   File 
> "/Users/LabBioMol/galaxy-python/galaxy-dist/eggs/PasteScript-1.7.3-py2.7.egg/paste/script/serve.py",
>  line 313, in loadapp
>     **kw)
>   File 
> "/Users/LabBioMol/galaxy-python/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.7.egg/paste/deploy/loadwsgi.py",
>  line 204, in loadapp
>     return loadobj(APP, uri, name=name, **kw)
>   File 
> "/Users/LabBioMol/galaxy-python/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.7.egg/paste/deploy/loadwsgi.py",
>  line 224, in loadobj
>     global_conf=global_conf)
>   File 
> "/Users/LabBioMol/galaxy-python/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.7.egg/paste/deploy/loadwsgi.py",
>  line 248, in loadcontext
>     global_conf=global_conf)
>   File 
> "/Users/LabBioMol/galaxy-python/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.7.egg/paste/deploy/loadwsgi.py",
>  line 278, in _loadconfig
>     return loader.get_context(object_type, name, global_conf)
>   File 
> "/Users/LabBioMol/galaxy-python/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.7.egg/paste/deploy/loadwsgi.py",
>  line 413, in get_context
>     section)
>   File 
> "/Users/LabBioMol/galaxy-python/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.7.egg/paste/deploy/loadwsgi.py",
>  line 458, in _context_from_explicit
>     value = import_string(found_expr)
>   File 
> "/Users/LabBioMol/galaxy-python/galaxy-dist/eggs/PasteDeploy-1.3.3-py2.7.egg/paste/deploy/loadwsgi.py",
>  line 18, in import_string
>     return pkg_resources.EntryPoint.parse("x="+s).load(False)
>   File "/Users/LabBioMol/galaxy-python/galaxy-dist/lib/pkg_resources.py", 
> line 1954, in load
>     entry = __import__(self.module_name, globals(),globals(), ['__name__'])
>   File 
> "/Users/LabBioMol/galaxy-python/galaxy-dist/lib/galaxy/web/__init__.py", line 
> 5, in <module>
>     from framework import expose, json, json_pretty, require_login, 
> require_admin, url_for, error, form, FormBuilder, expose_api
>   File 
> "/Users/LabBioMol/galaxy-python/galaxy-dist/lib/galaxy/web/framework/__init__.py",
>  line 31, in <module>
>     from babel.support import Translations
>   File 
> "/Users/LabBioMol/galaxy-python/galaxy-dist/eggs/Babel-0.9.4-py2.7.egg/babel/support.py",
>  line 29, in <module>
>     from babel.dates import format_date, format_datetime, format_time, LC_TIME
>   File 
> "/Users/LabBioMol/galaxy-python/galaxy-dist/eggs/Babel-0.9.4-py2.7.egg/babel/dates.py",
>  line 34, in <module>
>     LC_TIME = default_locale('LC_TIME')
>   File 
> "/Users/LabBioMol/galaxy-python/galaxy-dist/eggs/Babel-0.9.4-py2.7.egg/babel/core.py",
>  line 642, in default_locale
>     return '_'.join(filter(None, parse_locale(locale)))
>   File 
> "/Users/LabBioMol/galaxy-python/galaxy-dist/eggs/Babel-0.9.4-py2.7.egg/babel/core.py",
>  line 763, in parse_locale
>     raise ValueError('expected only letters, got %r' % lang)
> ValueError: expected only letters, got 'utf-8'
> iMac-de-Biologia:galaxy-dist LabBioMol$ 
> 
> 
> Now I would appreciate if you could advise me what is the problem and how to 
> solve it.
> 
> Thanks for your attention in advance.
> 
> Best regards
> 
> SMJ
> -- 
> SMJ
> 
> Seyed Mehdi Jazayeri
> 
> ___________________________________________________________
> The Galaxy User list should be used for the discussion of
> Galaxy analysis and other features on the public server
> at usegalaxy.org.  Please keep all replies on the list by
> using "reply all" in your mail client.  For discussion of
> local Galaxy instances and the Galaxy source code, please
> use the Galaxy Development list:
> 
>  http://lists.bx.psu.edu/listinfo/galaxy-dev
> 
> To manage your subscriptions to this and other Galaxy lists,
> please use the interface at:
> 
>  http://lists.bx.psu.edu/


___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

Reply via email to