Ok. Perhaps I am not understanding the process- I am not making any head way in transfering the data from one Galaxy instance to other. I have uploaded some files in Rutsch lab galaxy instance and have url http://galaxy.tuebingen.mpg.de/workflow/for_direct_import?id=9b305a114b324ccf
Nothing is happening. Is it possible that some one from Galaxy team can enlist steps of - how to transfer files (data) from one galaxy instance to other please, considering me as a beginer. Thanks. Sorry for pushing this question. Vasu On Fri, May 25, 2012 at 11:33 AM, Dannon Baker <[email protected]> wrote: > Hi, > > Just wanted to add a few clarifications here. It definitely *is* > currently possible to transfer a workflow from one instance to another > instance that does not have (some or all) of the tools for a particular > workflow. > > The error you're running into "No JSON object" means that you likely have > the wrong link to your workflow. The one you want is accessible via the > workflow context menu -> Download or Export -> URL for importing into > another galaxy. Or, you could just download the raw file if you want and > upload that as you figured out. The format of the correct URL should look > like this, note the "for_direct_import" in the string: > > https://main.g2.bx.psu.edu/workflow/for_direct_import?id=53b7bf0869d3e7ee > > As a correction to what was previously said, I would not recommend > stripping out tools from an existing workflow prior to export. When you > upload the workflow to a new instance, if tools aren't available you will > see something like the following when you edit the workflow, which > specifies that the tool is not found: > > > And at this point the unrecognized tools can be installed if it's your > galaxy server, or if you wish, removed from the workflow via the editor. > This must be done before the workflow will be usable. > > Lastly, workflows don't contain any data, just the organization and > parameters of steps for a process. What it sounds like you're looking for > (to get your data there as well) is a history export, which is available > through the menu at the top of your history as "Export to File". > > -Dannon > > > On May 24, 2012, at 4:06 PM, shamsher jagat wrote: > > Thanks Jen for the update. I tried following: > Go to Ratsch Galaxy instance > workflow> make work flow accessible via link > Go to galaxy Penn server > Workflow> import workflow URL> galaxy UR > > error is > The data content does not appear to be a Galaxy workflow. > Exception: No JSON object could be decoded: line 1 column 0 (char 0) > > I also downloaded the file from Ratsch serever saved on computer and use > option of Choose file under import galaxy flow it importe dthe file afetr a > while and when I opened workflow there was no data only steps of the > workflow were there. > > Do you have any suggestion wheer I am doing something wrong. > > Thanks > > >
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