Hi again,

The problem with ftp transferred files not showing up under my account in 
Galaxy (main) is actually solved now. I could be an issue of being logged in 
from many clients at the same time - when I logout from Galaxy and then start 
ftp transfer - upon logging in to Galaxy again I can indeed see the files 
listed under "Upload File".
All your items 1-4 below checked out as ok by the way and I was below the quota.

Cheers

/Hans

From: Jennifer Jackson [mailto:j...@bx.psu.edu]
Sent: den 4 juli 2012 22:39
To: Hans Matsson
Cc: galaxy-u...@bx.psu.edu
Subject: Re: [galaxy-user] Problem with ftp transfer of large bam files

Helllo Hans,

Some items to double check:

1 - The ftp server is: "main.g2.bx.psu.edu"
2 - Files are 50G or smaller. This is a hard limit - if your data is larger, a 
local or cloud instance will be needed: http://getgalaxy.org
3 - FileZilla reports that FTP is successful (there is a tab at the bottom of 
the UI, click on this and it will list the actual status of transfer, so that 
there is no ambiguity)
4 - The user/pass credentials used in Filezilla are the same as those being 
used for your Galaxy account. If you have multiple accounts (you shouldn't...), 
the data may be in another account.
*note:* If you are using multiple accounts, please copy all data to a single 
account and permanently delete from the others. The public instance supports 
one account per user only.

If you are over quota (have more than 250G of data), this will prevent moving a 
data file from the FTP transfer area into a history, but it will not block the 
FTP transfer itself.

It does sound as if you have already seen the FTP wiki/screencast, but I'll 
post the wiki just in case:
http://wiki.g2.bx.psu.edu/FTPUpload

Hopefully one of these helps to work out the issue,

Jen
Galaxy team
On 7/4/12 7:24 AM, Hans Matsson wrote:
Hi,
I´m using Galaxy (main) browser on a Win 7 PC to get statistics from my 
sequencing runs. Now I have bam files which are too big for upload from my 
local hard drive so I tried to ftp upload to main.g2.bx.psu.edu via a client 
(FileZilla). The transfer of files seems to be complete but the files do not 
appear under Get Data/Upload File and I have the message "Your FTP upload 
directory contains no files". I have tried to upload txt, zip, and bam files by 
ftp but nothing worked.


Any suggestions?

Many thanks
/Hans

Hans Matsson, PhD
Karolinska Institutet
Department of Biosciences and Nutrition
Novum
Hälsovägen 7-9
SE-141 83 Huddinge, Sweden

Email: hans.mats...@ki.se<mailto:hans.mats...@ki.se>
Phone (office): +46-8-524 81143
¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤¤





___________________________________________________________

The Galaxy User list should be used for the discussion of

Galaxy analysis and other features on the public server

at usegalaxy.org.  Please keep all replies on the list by

using "reply all" in your mail client.  For discussion of

local Galaxy instances and the Galaxy source code, please

use the Galaxy Development list:



  http://lists.bx.psu.edu/listinfo/galaxy-dev



To manage your subscriptions to this and other Galaxy lists,

please use the interface at:



  http://lists.bx.psu.edu/



--

Jennifer Jackson

http://galaxyproject.org

___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

Reply via email to