dear all these are the cuffdiff outputs for the same transcript/gene
(one isoform only):

transcript differential expression
value1       value2        log2fold     test stat       pvalue
          q value      significant
18.8175 114.371 2.60357 -2.88358        0.00393177      0.0630024       no



gene differential expression
value1       value2        log2fold     test stat       pvalue
          q value      significant
18.8175 114.371 2.60357 -2.88358        0.00393177      0.0397768       yes


how could be that the gene expression in significnat but the
transcript is not?all the values are the same, but the q values
changes.Please explani!!I 'm really concerned about how cuffdiff makes
these calculation!

thanks
ib
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