dear all these are the cuffdiff outputs for the same transcript/gene
(one isoform only):
transcript differential expression
value1 value2 log2fold test stat pvalue
q value significant
18.8175 114.371 2.60357 -2.88358 0.00393177 0.0630024 no
gene differential expression
value1 value2 log2fold test stat pvalue
q value significant
18.8175 114.371 2.60357 -2.88358 0.00393177 0.0397768 yes
how could be that the gene expression in significnat but the
transcript is not?all the values are the same, but the q values
changes.Please explani!!I 'm really concerned about how cuffdiff makes
these calculation!
thanks
ib
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