Messages by Date
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2012/10/07
[galaxy-user] How to do an GO enrichment analysis in Galaxy?
Yan He
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2012/10/05
Re: [galaxy-user] RSEM on Galaxy
Sachit Adhikari
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2012/10/05
[galaxy-user] Galaxy October 5, 2012 Distribution & News Brief
Jennifer Jackson
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2012/10/05
Re: [galaxy-user] RSEM on Galaxy
Victor
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2012/10/05
Re: [galaxy-user] RSEM on Galaxy
Ross
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2012/10/05
[galaxy-user] RSEM on Galaxy
Alicia R . Pérez-Porro
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2012/10/05
[galaxy-user] data expiration policy
Hiram Clawson
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2012/10/05
[galaxy-user] RNA-seq analysis withtout reference genome
Alicia R . Pérez-Porro
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2012/10/04
Re: [galaxy-user] Datasets Disappear following import of additional datasets
Jennifer Jackson
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2012/10/04
[galaxy-user] Datasets Disappear following import of additional datasets
Josh Romney
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2012/10/04
Re: [galaxy-user] Fastq-groomer help
Nate Coraor
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2012/10/04
[galaxy-user] Trim Galore Galaxy Integration
Sachit Adhikari
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2012/10/04
Re: [galaxy-user] Trim Galore Galaxy Integration
Björn Grüning
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2012/10/04
[galaxy-user] Trim Galore Galaxy Integration
Sachit Adhikari
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2012/10/04
Re: [galaxy-user] Galaxy in cloud (not Amazon)
Enis Afgan
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2012/10/03
Re: [galaxy-user] GeneTrack server error
Jennifer Jackson
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2012/10/03
Re: [galaxy-user] Performing operations on tab delimited text files
Jennifer Jackson
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2012/10/03
[galaxy-user] Fastq-groomer help
Kshama Aswath
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2012/10/03
[galaxy-user] Performing operations on tab delimited text files
Lanelle Oni Edwards
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2012/10/03
Re: [galaxy-user] blast tools on free public server
Jennifer Jackson
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2012/10/03
Re: [galaxy-user] blast tools on free public server
Peter Cock
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2012/10/03
Re: [galaxy-user] Cannot find upload options
Jennifer Jackson
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2012/10/03
[galaxy-user] Cannot find upload options
Matina Fragkogianni
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2012/10/03
[galaxy-user] blast tools on free public server
John DeFilippo
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2012/10/03
Re: [galaxy-user] Installing Galaxy on SGE Cluster - Questions
Nate Coraor
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2012/10/03
Re: [galaxy-user] Cuffdiff no without replicates
Sean Davis
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2012/10/03
Re: [galaxy-user] Cuffdiff no without replicates
Ross
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2012/10/02
Re: [galaxy-user] Installing Galaxy on SGE Cluster - Questions
greg
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2012/10/02
Re: [galaxy-user] Installing Galaxy on SGE Cluster - Questions
Nate Coraor
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2012/10/02
[galaxy-user] Installing Galaxy on SGE Cluster - Questions
greg
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2012/10/02
[galaxy-user] Galaxy download
Lizex Husselmann
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2012/10/01
Re: [galaxy-user] FTP Upload Error
Jennifer Jackson
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2012/10/01
[galaxy-user] October 2012 Galaxy Update
Dave Clements
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2012/10/01
Re: [galaxy-user] igenome error
Darrol Baker
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2012/10/01
Re: [galaxy-user] igenome error
Jeremy Goecks
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2012/10/01
[galaxy-user] igenome error
Paul Brady
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2012/10/01
Re: [galaxy-user] Errors during database migration after updating galaxy
Greg Von Kuster
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2012/09/30
Re: [galaxy-user] Errors during database migration after updating galaxy
Joel Rosenberg
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2012/09/30
[galaxy-user] Errors during database migration after updating galaxy
Joel Rosenberg
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2012/09/27
Re: [galaxy-user] server down?
Jennifer Jackson
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2012/09/27
Re: [galaxy-user] Training
Jennifer Jackson
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2012/09/27
[galaxy-user] Training
Ryan Peters
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2012/09/27
[galaxy-user] GeneTrack server error
Doo Yang
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2012/09/27
Re: [galaxy-user] GFF not recognized in CUFFLINK
Qian Dong
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2012/09/27
[galaxy-user] FreeBayes repeated error
Dalgard, Clifton
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2012/09/27
[galaxy-user] server down?
DEDRICK
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2012/09/26
Re: [galaxy-user] GFF not recognized in CUFFLINK - Re: adding new genome
Jennifer Jackson
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2012/09/26
[galaxy-user] Cuffmerge Error
Jennifer Jackson
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2012/09/26
Re: [galaxy-user] GFF not recognized in CUFFLINK
Jennifer Jackson
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2012/09/26
Re: [galaxy-user] GFF not recognized in CUFFLINK
Kenneth Auerbach
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2012/09/26
Re: [galaxy-user] GFF not recognized in CUFFLINK
Jennifer Jackson
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2012/09/26
Re: [galaxy-user] adding D. yakuba reference genome
Jennifer Jackson
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2012/09/26
[galaxy-user] adding D. yakuba reference genome
Stern PhD, David L
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2012/09/26
[galaxy-user] GFF not recognized in CUFFLINK
Qian Dong
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2012/09/26
[galaxy-user] Galaxy for SAGESeq
Sujoy Ghosh
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2012/09/25
Re: [galaxy-user] extract genome sequence
Jennifer Jackson
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2012/09/25
[galaxy-user] public repository for workflows?
Kenny Billiau
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2012/09/25
Re: [galaxy-user] extract genome sequence
Yan He
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2012/09/24
Re: [galaxy-user] extract genome sequence
Jennifer Jackson
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2012/09/24
Re: [galaxy-user] extract genome sequence
graham etherington (TSL)
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2012/09/24
Re: [galaxy-user] extract genome sequence
Björn Grüning
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2012/09/23
[galaxy-user] extract genome sequence
Yan He
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2012/09/21
[galaxy-user] FTP Upload Error
Amanda Jones
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2012/09/20
[galaxy-user] Galaxy September 20, 2012 Distribution & News Brief
Jennifer Jackson
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2012/09/20
Re: [galaxy-user] How much FPKM can be take into consideration when compare gene expression
Luciano Cosme
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2012/09/19
[galaxy-user] How much FPKM can be take into consideration when compare gene expression
Du, Jianguang
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2012/09/19
Re: [galaxy-user] How to rotate Galaxy log file
Jennifer Jackson
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2012/09/18
Re: [galaxy-user] Cloudman share string not working
Dannon Baker
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2012/09/18
Re: [galaxy-user] Cloudman share string not working
greg
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2012/09/18
Re: [galaxy-user] Error executing tool: Unable to create output dataset: object store is full
Jennifer Jackson
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2012/09/18
Re: [galaxy-user] Cloudman share string not working
Dannon Baker
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2012/09/18
[galaxy-user] Cloudman share string not working
greg
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2012/09/18
[galaxy-user] Error executing tool: Unable to create output dataset: object store is full
Angela Inácio
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2012/09/17
Re: [galaxy-user] Galaxy error: can't fine fasta file
Jennifer Jackson
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2012/09/17
Re: [galaxy-user] Galaxy error: can't fine fasta file
Jennifer Jackson
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2012/09/17
Re: [galaxy-user] FTP upload problem
Jennifer Jackson
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2012/09/17
Re: [galaxy-user] Galaxy error: can't fine fasta file
Jennifer Jackson
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2012/09/17
[galaxy-user] Galaxy error: can't fine fasta file
Kenneth R. Auerbach
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2012/09/17
Re: [galaxy-user] Galaxy CloudMan - Nodes can't make their own qsub calls?
greg
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2012/09/16
[galaxy-user] 答复: FTP upload problem
Yan He
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2012/09/15
Re: [galaxy-user] Galaxy CloudMan - Nodes can't make their own qsub calls?
Enis Afgan
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2012/09/15
[galaxy-user] Why doesn't bowtie in galaxy accepting colorspace reads directly?
Praveen Raj Somarajan
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2012/09/14
Re: [galaxy-user] Galaxy CloudMan - Nodes can't make their own qsub calls?
greg
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2012/09/14
Re: [galaxy-user] Galaxy CloudMan - Nodes can't make their own qsub calls?
greg
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2012/09/14
Re: [galaxy-user] Galaxy CloudMan - Nodes can't make their own qsub calls?
greg
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2012/09/14
Re: [galaxy-user] Does Tophat output *.accepted hits file contain headers?
Jennifer Jackson
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2012/09/14
Re: [galaxy-user] problem uploading via FTP server
Jennifer Jackson
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2012/09/14
[galaxy-user] problem uploading via FTP server
L.M. Slot
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2012/09/14
Re: [galaxy-user] none availability genome.fa files through mapping modules on local server
Jennifer Jackson
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2012/09/14
Re: [galaxy-user] Galaxy CloudMan - Nodes can't make their own qsub calls?
greg
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2012/09/14
[galaxy-user] none availability genome.fa files through mapping modules on local server
Sandrine Imbeaud
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2012/09/13
Re: [galaxy-user] No output produced.....
Jeremy Goecks
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2012/09/13
[galaxy-user] No output produced.....
Neil.Burdett
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2012/09/13
Re: [galaxy-user] Counting RNA-seq reads per class.
Jennifer Jackson
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2012/09/13
Re: [galaxy-user] Counting RNA-seq reads per class.
Jennifer Jackson
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2012/09/13
Re: [galaxy-user] Galaxy CloudMan - Nodes can't make their own qsub calls?
James Taylor
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2012/09/13
Re: [galaxy-user] Galaxy CloudMan - Nodes can't make their own qsub calls?
greg
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2012/09/13
[galaxy-user] Does Tophat output *.accepted hits file contain headers?
Du, Jianguang
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2012/09/13
[galaxy-user] Galaxy CloudMan - Nodes can't make their own qsub calls?
greg
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2012/09/13
Re: [galaxy-user] How can I extract sequence information fromm cuffdiff files?
Jennifer Jackson
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2012/09/13
Re: [galaxy-user] How can I extract sequence information fromm cuffdiff files?
Jennifer Jackson
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2012/09/13
[galaxy-user] How can I extract sequence information fromm cuffdiff files?
Humberto Boncristiani
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2012/09/13
Re: [galaxy-user] Tophat results
Jennifer Jackson
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2012/09/13
Re: [galaxy-user] Fwd: Galaxy: RNA-seq analysis problems
Jennifer Jackson
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2012/09/13
Re: [galaxy-user] Adding a custom genome for using MACS in Galaxy
Jennifer Jackson
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2012/09/13
Re: [galaxy-user] Unable to BAM data on UCSC or Ensembl browsers
Daniel Blankenberg
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2012/09/13
[galaxy-user] Unable to BAM data on UCSC or Ensembl browsers
Joachim Jacob
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2012/09/12
Re: [galaxy-user] Peak-calling with MACS from .bowtie file
Jennifer Jackson
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2012/09/12
Re: [galaxy-user] Using tool on input data set
Peter Cock
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2012/09/12
[galaxy-user] Using tool on input data set
kauerbach
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2012/09/12
[galaxy-user] Amplicon analysis with Galaxy
Juha-Pekka Pursiheimo
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2012/09/11
[galaxy-user] Peak-calling with MACS from .bowtie file
Sébastien Vigneau
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2012/09/11
Re: [galaxy-user] MACS out put files from Galaxy
Jennifer Jackson
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2012/09/11
Re: [galaxy-user] interupted running jobs restart
Nate Coraor
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2012/09/11
Re: [galaxy-user] MACS out put files from Galaxy
Duclot, Florian
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2012/09/11
[galaxy-user] MACS out put files from Galaxy
peter scot
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2012/09/11
[galaxy-user] Fwd: Galaxy: RNA-seq analysis problems
James Taylor
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2012/09/11
Re: [galaxy-user] Adding a custom genome for using MACS in Galaxy
Mathew Bunj
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2012/09/10
[galaxy-user] Tophat results
Xiefan Fang
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2012/09/10
Re: [galaxy-user] Adding a custom genome for using MACS in Galaxy
Jennifer Jackson
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2012/09/10
[galaxy-user] Adding a custom genome for using MACS in Galaxy
Mathew Bunj
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2012/09/10
[galaxy-user] Counting RNA-seq reads per class.
Mohammad Heydarian
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2012/09/10
Re: [galaxy-user] Possible to share with non-galaxy users on a login-required
Jennifer Jackson
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2012/09/10
[galaxy-user] Possible to share with non-galaxy users on a login-required
Joachim Jacob
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2012/09/07
Re: [galaxy-user] Number of mismatches allowed in the initial read mapping
Jennifer Jackson
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2012/09/07
[galaxy-user] How to rotate Galaxy log file
Lukasz Lacinski
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2012/09/07
[galaxy-user] Galaxy September 7, 2012 Distribution & News Brief
Jennifer Jackson
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2012/09/06
[galaxy-user] Number of mismatches allowed in the initial read mapping
Du, Jianguang
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2012/09/06
Re: [galaxy-user] Please help to understand the square root of Jensen-Shannon divergence
Jennifer Jackson
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2012/09/06
Re: [galaxy-user] Please help to understand the square root of Jensen-Shannon divergence
Du, Jianguang
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2012/09/06
Re: [galaxy-user] Please help to understand the square root of Jensen-Shannon divergence
Jennifer Jackson
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2012/09/06
[galaxy-user] Tophat settings
Du, Jianguang
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2012/09/06
Re: [galaxy-user] Tools won't go away even after deleting it from tool_conf.xml
Hans-Rudolf Hotz
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2012/09/06
[galaxy-user] Tools won't go away even after deleting it from tool_conf.xml
Makis Ladoukakis
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2012/09/05
Re: [galaxy-user] git mirror
Shantanu Pavgi
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2012/09/05
Re: [galaxy-user] git mirror
Luca Pireddu
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2012/09/04
Re: [galaxy-user] git mirror
Peter Cock
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2012/09/04
[galaxy-user] Please help to understand the square root of Jensen-Shannon divergence
Du, Jianguang
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2012/09/04
[galaxy-user] git mirror
Luca Pireddu
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2012/09/04
Re: [galaxy-user] Downloading a zip file .......
Jennifer Jackson
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2012/09/04
Re: [galaxy-user] MACS- Duplicate reads removal
Jennifer Jackson
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2012/09/02
[galaxy-user] Downloading a zip file .......
Neil.Burdett
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2012/08/31
[galaxy-user] MACS- Duplicate reads removal
Yanina Bogliotti
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2012/08/31
Re: [galaxy-user] No reference genome listed for NGS: Mapping Map with TMAP for Ion Torrent
Jennifer Jackson
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2012/08/31
Re: [galaxy-user] problem running MACS on Galaxy
Jennifer Jackson
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2012/08/31
[galaxy-user] problem running MACS on Galaxy
Amit Pande
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2012/08/29
[galaxy-user] September 2012 Galaxy Update
Dave Clements
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2012/08/29
[galaxy-user] No reference genome listed for NGS: Mapping Map with TMAP for Ion Torrent
Catherine Dumur
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2012/08/28
Re: [galaxy-user] Should I "use raw junction" and "Only look for supplied junctions"
Jennifer Jackson
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2012/08/28
[galaxy-user] Should I "use raw junction" and "Only look for supplied junctions"
Du, Jianguang
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2012/08/27
Re: [galaxy-user] Installing galaxy with Apache ...
Neil.Burdett
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2012/08/27
Re: [galaxy-user] Text Manipulation
Lee M. Silver
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2012/08/27
[galaxy-user] How to decide if the deference is significant
Du, Jianguang
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2012/08/27
Re: [galaxy-user] Is there web-based CummeRbund?
Carlos Borroto
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2012/08/27
Re: [galaxy-user] Installing galaxy with Apache ...
Carlos Borroto
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2012/08/27
Re: [galaxy-user] Please help with the settings for Cufflink, Cuffmerge and Cuffdiff
Jennifer Jackson
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2012/08/27
[galaxy-user] Calling SNP
Francesco Vitiello
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2012/08/27
[galaxy-user] Please help with the settings for Cufflink, Cuffmerge and Cuffdiff
Du, Jianguang
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2012/08/27
Re: [galaxy-user] Text Manipulation
Jennifer Jackson
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2012/08/27
[galaxy-user] Galaxy-France -- Communauté française de Galaxy (French Galaxy Community)
Dave Clements
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2012/08/27
Re: [galaxy-user] Please help me check the quality of the Tophat mapping to reference genome
Du, Jianguang
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2012/08/27
[galaxy-user] Text Manipulation
Jennifer Jackson
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2012/08/27
Re: [galaxy-user] Please help me check the quality of the Tophat mapping to reference genome
Jennifer Jackson
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2012/08/27
[galaxy-user] Please help me check the quality of the Tophat mapping to reference genome
Du, Jianguang
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2012/08/27
[galaxy-user] interupted running jobs restart
petr
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2012/08/25
Re: [galaxy-user] Is there web-based CummeRbund?
Dave Clements
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2012/08/24
Re: [galaxy-user] Extract Spliced Transcripts from Cuffmerge
Jennifer Jackson
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2012/08/24
Re: [galaxy-user] Is tss_id unique for each transcript?
Jennifer Jackson
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2012/08/24
[galaxy-user] Is there web-based CummeRbund?
Du, Jianguang
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2012/08/24
[galaxy-user] Is tss_id unique for each transcript?
Du, Jianguang
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2012/08/24
Re: [galaxy-user] regarding upload of data locally on galaxy
Jennifer Jackson
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2012/08/24
[galaxy-user] regarding upload of data locally on galaxy
Amit Pande
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2012/08/24
Re: [galaxy-user] Installing galaxy with Apache ...
Jelle Scholtalbers
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2012/08/23
Re: [galaxy-user] Should I use iGenomes verson of a reference GTF for Tophat?
Jennifer Jackson
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2012/08/23
Re: [galaxy-user] Installing galaxy with Apache ...
Neil.Burdett
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2012/08/23
Re: [galaxy-user] Should I use iGenomes verson of a reference GTF for Tophat?
Du, Jianguang
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2012/08/23
Re: [galaxy-user] Installing Galaxy and Hooking into a SGE Cluster
John Jones
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2012/08/23
[galaxy-user] Extract Spliced Transcripts from Cuffmerge
Hanson, Sara J
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2012/08/23
Re: [galaxy-user] Should I use iGenomes verson of a reference GTF for Tophat?
Du, Jianguang
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2012/08/23
Re: [galaxy-user] Installing Galaxy and Hooking into a SGE Cluster
Peter Cock
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2012/08/23
Re: [galaxy-user] Should I use iGenomes verson of a reference GTF for Tophat?
Jennifer Jackson
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2012/08/23
Re: [galaxy-user] Installing Galaxy and Hooking into a SGE Cluster
mailing list
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2012/08/23
Re: [galaxy-user] Installing Galaxy and Hooking into a SGE Cluster
Joachim Baran
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2012/08/23
Re: [galaxy-user] Installing Galaxy and Hooking into a SGE Cluster
John Jones
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2012/08/23
Re: [galaxy-user] Should I use iGenomes verson of a reference GTF for Tophat?
Du, Jianguang
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2012/08/23
Re: [galaxy-user] Installing Galaxy and Hooking into a SGE Cluster
mailing list
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2012/08/23
Re: [galaxy-user] How much can I trimm my reads
Jennifer Jackson
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2012/08/23
Re: [galaxy-user] Should I use iGenomes verson of a reference GTF for Tophat?
Jennifer Jackson
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2012/08/23
Re: [galaxy-user] Installing Galaxy and Hooking into a SGE Cluster
John Jones
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2012/08/23
Re: [galaxy-user] What is the minimum Quality should I set for Filter FASTQ?
Loraine, Ann
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2012/08/23
[galaxy-user] Should I use iGenomes verson of a reference GTF for Tophat?
Du, Jianguang
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2012/08/23
[galaxy-user] What is the minimum Quality should I set for Filter FASTQ?
Du, Jianguang
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2012/08/23
[galaxy-user] How much can I trimm my reads
Du, Jianguang
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2012/08/23
Re: [galaxy-user] Installing galaxy with Apache ...
Jelle Scholtalbers
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2012/08/22
[galaxy-user] Installing galaxy with Apache ...
Neil.Burdett
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2012/08/22
Re: [galaxy-user] tophat deletions output
Jennifer Jackson
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2012/08/22
Re: [galaxy-user] inconsistent cuffdiff output
Jennifer Jackson
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2012/08/22
Re: [galaxy-user] How to find the alternatively spliced segment of genes in Cuffdiff output
Jennifer Jackson
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2012/08/22
Re: [galaxy-user] How to upload multiple files......
Jennifer Jackson
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2012/08/22
[galaxy-user] Installing Galaxy and Hooking into a SGE Cluster
mailing list