The problem is most likely with the SAM files and sorting. Please see:
"Why won't my SAM dataset work with Cufflinks?"
On 9/26/12 12:54 PM, Kenneth Auerbach wrote:
I'm also getting these error when I run cuffmerge. It was run without a
reference so it shouldn't have anything to do with the reference. Can
you please tell me how to fix this?
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at: