Instructions for including a new genome indexed for tools, including how to download the same indexes used on the public Main Galaxy instance hosted at http://usegalaxy.org, are in these wikis:


The "dbkey" that you will want to use is simply "hg19" for this genome, should you use the rsync service.

Going forward, the galaxy-...@bx.psu.edu mailing list would be a good choice for local install questions. The development community can help solve more complex problems as they come up and/or you might be interested in following discussions:

Hopefully this helps!

Galaxy team

On 9/26/12 12:47 PM, Kenneth Auerbach wrote:

I'm getting this cuffmerge error on our local Galaxy instance. I assume
it is because it doesn't have the hg19 reference genome. Can you please
tell me how I would include into this Galaxy installation?

Thank you.

Jennifer Jackson
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