Looking at your screenshot, you have "Use a built-in index" selected. If you change this to "Use one from the history", do you see your fasta file listed?
-Dannon On Oct 10, 2012, at 9:02 AM, greg <margeem...@gmail.com> wrote: > Thanks Jen. But it looks like the datatype was already set to fasta. > I tried setting it again and saving but it didn't seem to help. > > Is there anything else I can try? > > thanks, > > Greg > > On Tue, Oct 9, 2012 at 9:10 PM, Jennifer Jackson <j...@bx.psu.edu> wrote: >> Hi Greg, >> >> Nice pic, it helps! My guess is that the datatype is not assigned as >> "fasta". To do this, click on the pencil icon for the custom reference >> genome dataset (#1) to bring up the Edit Attributes forms in the center >> panel. Then click on the "Datatype" tab and change this to be "fasta" and >> save. >> >> Full help in our wiki with Custom genomes starts here: >> http://wiki.g2.bx.psu.edu/Support#Custom_reference_genome >> >> Please let us know if you need more help, >> >> Jen >> Galaxy team >> >> >> >> >> On 10/9/12 11:08 AM, greg wrote: >>> >>> Hi guys, >>> >>> As shown in the attached screenshot I uploaded a fasta file. And I >>> want to use it as my reference genome for running bow tie but it >>> doesn't appear in the dropdown on the bow tie tool. >>> >>> I'm sure I'm missing something obvious. >>> >>> Thanks, >>> >>> Greg >>> >>> >>> >>> ___________________________________________________________ >>> The Galaxy User list should be used for the discussion of >>> Galaxy analysis and other features on the public server >>> at usegalaxy.org. Please keep all replies on the list by >>> using "reply all" in your mail client. For discussion of >>> local Galaxy instances and the Galaxy source code, please >>> use the Galaxy Development list: >>> >>> http://lists.bx.psu.edu/listinfo/galaxy-dev >>> >>> To manage your subscriptions to this and other Galaxy lists, >>> please use the interface at: >>> >>> http://lists.bx.psu.edu/ >> >> >> -- >> Jennifer Jackson >> http://galaxyproject.org > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
