I forgot to add my value of DRMAA_LIBRARY_PATH. Note that I just need
DRMAA_LIBRARY_PATH to point to the library being used. So in the example
below, I had this:
> echo $DRMAA_LIBRARY_PATH
/usr/lib/libdrmaa.so
-Scott
----- Original Message -----
> Have you installed SGE on the same machine? If so, then you should be
> able to
> do a "locate libdrmaa.so", which should point to SGE's DRMAA library.
> For example,
> on a machine that I use, I see this:
> $ locate libdrmaa.so
> /usr/lib/libdrmaa.so
> /usr/lib/libdrmaa.so.1.0
> $ ls /usr/lib/libdrmaa*
> /usr/lib/libdrmaa.so /usr/lib/libdrmaa.so.1.0
> $ ls -la /usr/lib/libdrmaa.so
> lrwxrwxrwx 1 root root 15 Apr 18 2012 /usr/lib/libdrmaa.so ->
> libdrmaa.so.1.0
> You may also want to try "updatedb" (again, assuming you're using
> Linux) to index
> the files on your machine. Finally, if you can't find it, then you
> should check if you
> actually have SGE installed on that machine. I like to use "dpkg" on
> Ubuntu/Debian
> and "yum" on Centos to manipulate packages.
> -Scott
> ----- Original Message -----
> > I'm trying to install Galaxy on our SGE cluster (using the Unified
> > method).
>
> > I installed galaxy-dist, and now I'm on this section:
>
> > drmaa egg
>
> > The drmaa egg is provided by Galaxy, but you must tell it where
> > your
> > resource manager's DRMAA library is located, and this is done with
> > the $DRMAA_LIBRARY_PATH environment variable: % export
> > DRMAA_LIBRARY_PATH=/galaxy/lsf/7.0/linux2.6-glibc2.3-x86_64/lib/libdrmaa.so.1.0.3
>
> > % export
> > DRMAA_LIBRARY_PATH=/galaxy/sge/lib/lx24-amd64/libdrmaa.so.1.0
>
> > However I can't locate the the file libdrmaa.so.1.0.3 anywhere. In
> > fact I don't have have an lsf nor sge directory within galaxy-dist.
>
> > Thanks,
>
> > Greg
>
> > ___________________________________________________________
>
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> ___________________________________________________________
> The Galaxy User list should be used for the discussion of
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> at usegalaxy.org. Please keep all replies on the list by
> using "reply all" in your mail client. For discussion of
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> please use the interface at:
> http://lists.bx.psu.edu/
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
