Well, I want it to ultimately run under Apache. Does it still make sense to go in an init script?
thanks again, Greg On Mon, Nov 5, 2012 at 3:23 PM, Nate Coraor <n...@bx.psu.edu> wrote: > On Nov 5, 2012, at 3:15 PM, greg wrote: > >> And am I correct in the thinking that only the machine hosting the >> galaxy web interface and submitting jobs needs the export >> DRMAA_LIBRARY_PATH= variable? >> >> The normal nodes running jobs don't need this, right? > > Hi Greg, > > That's correct. If you're starting Galaxy with an init script, I'd put the > export there. > > --nate > >> >> Thanks, >> >> -Greg >> >> On Mon, Nov 5, 2012 at 3:12 PM, greg <margeem...@gmail.com> wrote: >>> Thanks Scott. I did turn up: /sge/8.0.1p4/lib/lx-amd64/libdrmaa.so.1.0 >>> >>> I guess that would be it. >>> >>> For a followup question ,how do I make the DRMAA_LIBRARY_PATH variable >>> permanent on the machine? >>> >>> -Greg >>> >>> >>> On Mon, Nov 5, 2012 at 3:03 PM, Scott McManus <scottmcma...@gatech.edu> >>> wrote: >>>> >>>> I forgot to add my value of DRMAA_LIBRARY_PATH. Note that I just need >>>> DRMAA_LIBRARY_PATH to point to the library being used. So in the example >>>> below, I had this: >>>> >>>>> echo $DRMAA_LIBRARY_PATH >>>> /usr/lib/libdrmaa.so >>>> >>>> -Scott >>>> >>>> ________________________________ >>>> >>>> Have you installed SGE on the same machine? If so, then you should be able >>>> to >>>> do a "locate libdrmaa.so", which should point to SGE's DRMAA library. For >>>> example, >>>> on a machine that I use, I see this: >>>> >>>> $ locate libdrmaa.so >>>> /usr/lib/libdrmaa.so >>>> /usr/lib/libdrmaa.so.1.0 >>>> $ ls /usr/lib/libdrmaa* >>>> /usr/lib/libdrmaa.so /usr/lib/libdrmaa.so.1.0 >>>> $ ls -la /usr/lib/libdrmaa.so >>>> lrwxrwxrwx 1 root root 15 Apr 18 2012 /usr/lib/libdrmaa.so -> >>>> libdrmaa.so.1.0 >>>> >>>> You may also want to try "updatedb" (again, assuming you're using Linux) >>>> to index >>>> the files on your machine. Finally, if you can't find it, then you should >>>> check if you >>>> actually have SGE installed on that machine. I like to use "dpkg" on >>>> Ubuntu/Debian >>>> and "yum" on Centos to manipulate packages. >>>> >>>> -Scott >>>> >>>> ________________________________ >>>> >>>> I'm trying to install Galaxy on our SGE cluster (using the Unified >>>> method). >>>> >>>> I installed galaxy-dist, and now I'm on this section: >>>> >>>> drmaa egg >>>> >>>> The drmaa egg is provided by Galaxy, but you must tell it where your >>>> resource manager's DRMAA library is located, and this is done with >>>> the$DRMAA_LIBRARY_PATH environment variable: >>>> >>>> % export >>>> DRMAA_LIBRARY_PATH=/galaxy/lsf/7.0/linux2.6-glibc2.3-x86_64/lib/libdrmaa.so.1.0.3 >>>> % export DRMAA_LIBRARY_PATH=/galaxy/sge/lib/lx24-amd64/libdrmaa.so.1.0 >>>> >>>> >>>> However I can't locate the the file libdrmaa.so.1.0.3 anywhere. In fact I >>>> don't have have an lsf nor sge directory within galaxy-dist. >>>> >>>> Thanks, >>>> >>>> Greg >>>> >>>> ___________________________________________________________ >>>> The Galaxy User list should be used for the discussion of >>>> Galaxy analysis and other features on the public server >>>> at usegalaxy.org. Please keep all replies on the list by >>>> using "reply all" in your mail client. For discussion of >>>> local Galaxy instances and the Galaxy source code, please >>>> use the Galaxy Development list: >>>> >>>> http://lists.bx.psu.edu/listinfo/galaxy-dev >>>> >>>> To manage your subscriptions to this and other Galaxy lists, >>>> please use the interface at: >>>> >>>> http://lists.bx.psu.edu/ >>>> >>>> >>>> >>>> ___________________________________________________________ >>>> The Galaxy User list should be used for the discussion of >>>> Galaxy analysis and other features on the public server >>>> at usegalaxy.org. Please keep all replies on the list by >>>> using "reply all" in your mail client. For discussion of >>>> local Galaxy instances and the Galaxy source code, please >>>> use the Galaxy Development list: >>>> >>>> http://lists.bx.psu.edu/listinfo/galaxy-dev >>>> >>>> To manage your subscriptions to this and other Galaxy lists, >>>> please use the interface at: >>>> >>>> http://lists.bx.psu.edu/ >>>> >>>> >>> >> ___________________________________________________________ >> The Galaxy User list should be used for the discussion of >> Galaxy analysis and other features on the public server >> at usegalaxy.org. Please keep all replies on the list by >> using "reply all" in your mail client. For discussion of >> local Galaxy instances and the Galaxy source code, please >> use the Galaxy Development list: >> >> http://lists.bx.psu.edu/listinfo/galaxy-dev >> >> To manage your subscriptions to this and other Galaxy lists, >> please use the interface at: >> >> http://lists.bx.psu.edu/ > ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
