I am having the following problems with RNAseq using galaxy; we have installed 
the Galaxy local version on local server.

1.       FastQC not running . gives an error and doesn't run on groomed or 
un-groomed FastQ file. The error message shows in the below pic.

2.       No reference genomein the drop down list in TOPHAT for illumine tool 
and TOPHAt2.

Any solution?

Thank you


Mira Bosso, M.Sc, B.D.S
Research associate
Pancreatic Islet Biology and Transplantation Unit

P.O.Box 1180, Dasman 15462, Kuwait
Phone:  +965 2224 2999 Ext.2803
Mob:      +96599500197
Email: mira.bi...@dasmaninstitute.org<mailto:mira.bi...@dasmaninstitute.org>

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