Kathryn, Are you using the galaxy cloud configuration provided by the team, or have you installed your own galaxy on a cloud instance?
It sounds like the latter, in which case you'll need to configure reference as detailed here: http://wiki.galaxyproject.org/Admin/NGS%20Local%20Setup. You may also want to experiment with using the preconfigured cloud instances, see this page for more information on those: http://wiki.galaxyproject.org/CloudMan -Dannon On Dec 18, 2012, at 2:21 PM, "Sun, Wenping [USA]" <sun_wenp...@bah.com> wrote: > Dear Galaxy members, > > I am new to galaxy and just installed galaxy on aws cloud. I am testing how > it works and have the following question below: > > 1. I tried to test bowtie2 with the dataset I uploaded, however, the > window for reference genome is very narrow and nothing from pull-down menu > can be selected. When I omit that option to execute bowtie2, galaxy give > error message for requesting reference genome. I am using hg19, should I > upload myself? If so, how? > 2. Same error happen for me to run fastqc --- the reference genome > selection window is way too narrow and nothing can be selected > > Thank you very much for your inputs and helps! > Kind regards, > Kathryn > > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
