On Mon, Feb 25, 2013 at 5:09 PM, Mohammad Mohiuddin wrote: > Hi, > > ... After uploading and processing the data, I will > have to BLAST all my sequences using NCBI BLAST but there is no BLAST option > in galaxy. How can I do that? And, is there any way to change the default > E-value of Galaxy?
Hi Mohiuddin, The public Galaxy server only offers Megablast (under NGS:Mapping) and only against four specific databases. If you want more options, there are wrappers for the NCBI BLAST+ suite in the Galaxy Tool Shed http://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus which can be installed in a local copy of Galaxy. If your group, department/university/company has their own Galaxy Instance, speak to your local Galaxy administrator about this. Regards, Peter ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
