Hi Oswaldo,
The soybean genome is already on our list of genomes to consider for
addition and was included on an internal list, that I have not put out
on our public development board:
https://trello.com/card/reference-genome-requests/506338ce32ae458f6d15e4b3/239
You can track progress through this ticket by following it. I can let
you know that in the immediate term (next month), these are probably not
going to be done. But I can't say much beyond that - things change fast.
To have Medicago truncatula added, we need it to be in a somewhat
finshed state and preferably to have an NCBI project. If you can send me
the project ID, plus actual accession including the accession of any
mito/chloro to included, we can add to the ticket above. No promises,
but at least that puts it on the list, with build specificity.
Meanwhile - the best news is that you don't have to wait for us at all -
you can start using this data right away with tools. Simply load the
genomes in fasta format into your history as datasets and use them as
custom genomes with tools that way. In fact, you may find this is a
better solution. You can even use a custom genome with visualizations
within Galaxy. Full instructions are here:
http://wiki.galaxyproject.org/Support#Custom_reference_genome
Take care,
Jen
Galaxy team
On 3/17/13 4:07 PM, Oswaldo Lopez wrote:
Hi my name is OswaldoI would like to analyse my RNAseq data from Medicago
truncatula and soybean samples on Galaxy. However, the genome of these legumes
are not listed on Galaxy, is there a way to get these genomes on Galaxy?
Thanks very much
Oswaldo
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
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