Hello Milad,
You have this query set up optimally for these tools - it is always best
to put the largest dataset "second" in the form. As the data is
processed, the second file goes into memory and the first is compared
against it. This can complete for system resources when large files are
processed, but the specifications you note for your computer are within
the range we recommend for personal usage and these standard tools.
If the job does fail for a memory reason, then you have a few choices.
The first is to break up the target (second file) into smaller datasets
and run the query against those individually, then merge the results.
The second is to consider a larger cloud instance:
htttp://getgalaxy.org/cloud
Best,
Jen
Galaxy team
On 4/20/13 5:44 AM, Milad Bastami wrote:
Hi every body
I tried to perform a joining task on two interval dataset. The 1st had
1500 region and the second one about 2 million region. The job is
still running (more than 4 hours) and it has affected system
performance. I'm not sure it is normal or not. If not, I don't know
it's the matter of galaxy limitations or my pc's hardware
configurations. Any help would be appreciated.
I am running galaxy local on bio-linux7 (win8 / bio-linux7 dual boot
system)
system configurations :
CPU : core i7 9610 (6M)
RAM : 8 G
linux swap : 8 G
linux root : >700 G
Milad Bastamis,
Department of Medical Genetics
Shahid Beheshti's university of Medical Science
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