Hi,

Any idea when the server is going to be up again?

         Boaz


Boaz Shaanan, Ph.D.
Dept. of Life Sciences
Ben-Gurion University of the Negev
Beer-Sheva 84105
Israel

E-mail: bshaa...@bgu.ac.il
Phone: 972-8-647-2220  Skype: boaz.shaanan
Fax:   972-8-647-2992 or 972-8-646-1710





________________________________________
From: galaxy-user-boun...@lists.bx.psu.edu 
[galaxy-user-boun...@lists.bx.psu.edu] on behalf of Joachim Jacob | VIB | 
[joachim.ja...@vib.be]
Sent: Friday, September 06, 2013 10:32 AM
To: kanwar...@gmail.com
Cc: galaxy-u...@bx.psu.edu
Subject: Re: [galaxy-user] Bam QC and coverage

Hi Shamsher,


Another alternative is to use bamqc from the qualimap suite. The wrapper you 
can find at:
http://toolshed.g2.bx.psu.edu/view/joachim-jacob/qualimap_suite

You need to install this tool in a local Galaxy, with the qualimap suite 
installed and perl (see README).


Cheers,
Joachim


> On 09/04/2013 09:59 PM, shamsher jagat wrote:

> I am looking for a tool to perform QC of Bam file especially following
> functions:
> 1. BAsic information and stat.
> 2. Coverage across reference features- gene/ transcripts.
> Is it possible to do it in Galaxy?
> Thanks

--
Joachim Jacob
Contact details: http://www.bits.vib.be/index.php/about/80-team


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