Hello Boaz,

The public Main Galaxy server experienced issues leading to unexpected downtime over the weekend. These have since been resolved. Please let us know if problems persist.


Our apologies for the inconvenience,

Jen
Galaxy team

On 9/9/13 2:03 AM, Boaz Shaanan wrote:
Hi,

Any idea when the server is going to be up again?

          Boaz


Boaz Shaanan, Ph.D.
Dept. of Life Sciences
Ben-Gurion University of the Negev
Beer-Sheva 84105
Israel

E-mail: bshaa...@bgu.ac.il
Phone: 972-8-647-2220  Skype: boaz.shaanan
Fax:   972-8-647-2992 or 972-8-646-1710





________________________________________
From: galaxy-user-boun...@lists.bx.psu.edu 
[galaxy-user-boun...@lists.bx.psu.edu] on behalf of Joachim Jacob | VIB | 
[joachim.ja...@vib.be]
Sent: Friday, September 06, 2013 10:32 AM
To: kanwar...@gmail.com
Cc: galaxy-u...@bx.psu.edu
Subject: Re: [galaxy-user] Bam QC and coverage

Hi Shamsher,


Another alternative is to use bamqc from the qualimap suite. The wrapper you 
can find at:
http://toolshed.g2.bx.psu.edu/view/joachim-jacob/qualimap_suite

You need to install this tool in a local Galaxy, with the qualimap suite 
installed and perl (see README).


Cheers,
Joachim


On 09/04/2013 09:59 PM, shamsher jagat wrote:
I am looking for a tool to perform QC of Bam file especially following
functions:
1. BAsic information and stat.
2. Coverage across reference features- gene/ transcripts.
Is it possible to do it in Galaxy?
Thanks
--
Joachim Jacob
Contact details: http://www.bits.vib.be/index.php/about/80-team


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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
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--
Jennifer Hillman-Jackson
http://galaxyproject.org

___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

 http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

 http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

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