Hello Ben,

The public Main Galaxy server experienced issues leading to unexpected downtime over the weekend. These have since been resolved. Please let us know if problems persist.


Our apologies for the inconvenience,

Jen
Galaxy team

On 9/9/13 6:44 AM, Ben Ben wrote:
Co-ask : When will the Galaxy Server work again?

Thanks for Galaxy Team's work and support!


On Mon, Sep 9, 2013 at 5:03 AM, Boaz Shaanan <bshaa...@bgu.ac.il <mailto:bshaa...@bgu.ac.il>> wrote:

    Hi,

    Any idea when the server is going to be up again?

             Boaz


    Boaz Shaanan, Ph.D.
    Dept. of Life Sciences
    Ben-Gurion University of the Negev
    Beer-Sheva 84105
    Israel

    E-mail: bshaa...@bgu.ac.il <mailto:bshaa...@bgu.ac.il>
    Phone: 972-8-647-2220  Skype: boaz.shaanan
    Fax:   972-8-647-2992 or 972-8-646-1710





    ________________________________________
    From: galaxy-user-boun...@lists.bx.psu.edu
    <mailto:galaxy-user-boun...@lists.bx.psu.edu>
    [galaxy-user-boun...@lists.bx.psu.edu
    <mailto:galaxy-user-boun...@lists.bx.psu.edu>] on behalf of
    Joachim Jacob | VIB | [joachim.ja...@vib.be
    <mailto:joachim.ja...@vib.be>]
    Sent: Friday, September 06, 2013 10:32 AM
    To: kanwar...@gmail.com <mailto:kanwar...@gmail.com>
    Cc: galaxy-u...@bx.psu.edu <mailto:galaxy-u...@bx.psu.edu>
    Subject: Re: [galaxy-user] Bam QC and coverage

    Hi Shamsher,


    Another alternative is to use bamqc from the qualimap suite. The
    wrapper you can find at:
    http://toolshed.g2.bx.psu.edu/view/joachim-jacob/qualimap_suite

    You need to install this tool in a local Galaxy, with the qualimap
    suite installed and perl (see README).


    Cheers,
    Joachim


    > On 09/04/2013 09:59 PM, shamsher jagat wrote:

    > I am looking for a tool to perform QC of Bam file especially
    following
    > functions:
    > 1. BAsic information and stat.
    > 2. Coverage across reference features- gene/ transcripts.
    > Is it possible to do it in Galaxy?
    > Thanks

    --
    Joachim Jacob
    Contact details: http://www.bits.vib.be/index.php/about/80-team


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    ___________________________________________________________
    The Galaxy User list should be used for the discussion of
    Galaxy analysis and other features on the public server
    at usegalaxy.org <http://usegalaxy.org>.  Please keep all replies
    on the list by
    using "reply all" in your mail client.  For discussion of
    local Galaxy instances and the Galaxy source code, please
    use the Galaxy Development list:

    http://lists.bx.psu.edu/listinfo/galaxy-dev

    To manage your subscriptions to this and other Galaxy lists,
    please use the interface at:

    http://lists.bx.psu.edu/

    To search Galaxy mailing lists use the unified search at:

    http://galaxyproject.org/search/mailinglists/




___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

   http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

   http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

   http://galaxyproject.org/search/mailinglists/

--
Jennifer Hillman-Jackson
http://galaxyproject.org

___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/

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