Hi, I just notice that NGS FASTQ Trimmer<https://usegalaxy.org/tool_runner?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fdevteam%2Ffastq_trimmer%2Ffastq_trimmer%2F1.0.0>by column can't detect the fastq file I loaded. Anyone knows why. thanks a lot.
On Fri, Jan 24, 2014 at 11:00 AM, <galaxy-user-requ...@lists.bx.psu.edu>wrote: > Send galaxy-user mailing list submissions to > galaxy-user@lists.bx.psu.edu > > To subscribe or unsubscribe via the World Wide Web, visit > http://lists.bx.psu.edu/listinfo/galaxy-user > or, via email, send a message with subject or body 'help' to > galaxy-user-requ...@lists.bx.psu.edu > > You can reach the person managing the list at > galaxy-user-ow...@lists.bx.psu.edu > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of galaxy-user digest..." > > > HEY! This is important! If you reply to a thread in a digest, please > 1. Change the subject of your response from "Galaxy-user Digest Vol ..." > to the original subject for the thread. > 2. Strip out everything else in the digest that is not part of the thread > you are responding to. > > Why? > 1. This will keep the subject meaningful. People will have some idea from > the subject line if they should read it or not. > 2. Not doing this greatly increases the number of emails that match search > queries, but that aren't actually informative. > > Today's Topics: > > 1. Re: Creating a Trackster visualisation from a reference in > your history (Jeremy Goecks) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Thu, 23 Jan 2014 15:49:44 -0500 > From: Jeremy Goecks <jgoe...@email.gwu.edu> > To: graham etherington (TSL) > <graham.ethering...@sainsbury-laboratory.ac.uk> > Cc: galaxy-user@lists.bx.psu.edu > Subject: Re: [galaxy-user] Creating a Trackster visualisation from a > reference in your history > Message-ID: <c3382f38-d243-4979-b6a7-ba13ef161...@email.gwu.edu> > Content-Type: text/plain; charset="windows-1252" > > > Is it possible to create a custom build and use it to view a SAM file > without adding the .len and .2bit files in to the Galaxy file system as an > administrator? > > Yes, it definitely is. > > > If so, what am I doing wrong? > > > This is a Galaxy bug which has been fixed in this commit: > > > https://bitbucket.org/galaxy/galaxy-central/commits/117fef56513fc563dd231516196cfd601c1635e2 > > We have a release coming up, so this fix will be included in the release > and will make it to our public server soon. In the meantime, note that you > can use the genome fasta file rather than the len file to create a custom > build and everything should work. > > Thanks, > J. > > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: < > http://lists.bx.psu.edu/pipermail/galaxy-user/attachments/20140123/4a84218a/attachment-0001.html > > > > ------------------------------ > > _______________________________________________ > galaxy-user mailing list > galaxy-user@lists.bx.psu.edu > http://lists.bx.psu.edu/listinfo/galaxy-user > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > > End of galaxy-user Digest, Vol 91, Issue 21 > ******************************************* > -- Gang Wang Ph.D. student Veterinary Integrative Bioscience College of Veterinary Medicine & Biomedical Sciences Texas A&M University College Station, TX 77843-4458
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