Hello Tania,
Read group info was recently introduced as of the updates to the public
Main server and source distribution on 2/10/2014 (last Monday). The
ticket for the change is here: https://trello.com/c/FdUYdbIn As far as I
know, this was the missing piece that permitted result use in CummeRbund.
This is other work requested or in progress for this tool suite, and you
can track progress (and up-vote) development tickets here:
https://trello.com/c/lIdpOZ88
https://trello.com/c/U7nceKdj
https://trello.com/c/GKx77bnL
https://trello.com/c/CL4YOsdR
If there is more to share about these tools, we will post an updated reply.
Thanks!
Jen
Galaxy team
On 2/17/14 2:56 AM, Dottorini, Tania wrote:
Dear all,
I would like to visualise by CummeRbund the Cuffdiff results obtained using the
cufflinks/cuffdiff workflow on the Galaxy server. My samples include replicates
data and when I ask for analysis to be done by CummeRbund, to compare
replicates, I get error messages. From past postings I red that the Galaxy
Cuffdiff does not allows you to download all the required files to be used by
CummeRbund for replicate comparisons. As far as I know, the only way to
overcome this problem is to run local computer Cuffdiff. I would like to know
if anything has changed so far concerning Galaxy Cuffdiff output files and if
there are other options instead of running local computer Cuffdiff to solve
this problem.
Any help would be appreciated
Thank you
Tania
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http://galaxyproject.org
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
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