Hi Tania,
Yes, you are correct, the count files only address a portion of the new
features. Recent updates to the underlying tools in the Tuxedo suite
have resulted in issues of this sort as well (among others). The current
plan is to continue with development to enhance the tool wrappers in
Galaxy to support as much downstream analysis as practical. I created a
new ticket as a catch-all to address this need in a global way. Details
will be added as work progresses. https://trello.com/c/ugu8dty0
This is a timely and important inquiry. Our user & development community
feedback is an important component in how work is prioritized. _/I
encourage you and others interested in this enchantment to "up-vote" the
ticket/__/in Trello./_ Comments are also welcome. Trello help:
https://wiki.galaxyproject.org/Issues
Best,
Jen
Galaxy team
On 2/18/14 5:45 AM, Dottorini, Tania wrote:
Hi Jennifer,
Thanks for your help, I did my Cuffdiff runs on 2/12/2014 but still I was not
able to analyse replicates by CummerBund. The output of replicates(cuff) is
empty.
Thank you
Tania
--
Jennifer Hillman-Jackson
http://galaxyproject.org
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