Hello, The UCSC mm9 build 37 is derived from NCBI. Please see the database credits at the bottom of the gateway page and click through for even more details.
Quote: The July 2007 mouse (Mus musculus) genome data were obtained from the Build 37 assembly by NCBI and the Mouse Genome Sequencing Consortium. In general, we only generate liftOver file between assemblies included in the UCSC Genome Browser. The process to do this is contained in the Chain/Net track creation documention. Do you run a local install with the alternate databases included? Do you currently use our code tree? Please let us know, Jennifer jackson ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Bernd Jagla" <[email protected]> wrote: > From: "Bernd Jagla" <[email protected]> > To: [email protected] > Sent: Friday, August 28, 2009 12:31:12 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] NCBI -> UCSC mouse genome coordinates conversion > > Hi, > > > > I found your e-mail at > http://hgdownload.cse.ucsc.edu/goldenPath/mm9/liftOver/ and was > wondering if > you could help me in translating coordinates for NCBI mouse build (37) > to > UCSC mouse (build 37). How can I tell if there are differences in the > builds > between NCBI/UCSC/ENSEMBL and how would I convert them generally. (So > I > don't have to ask you each time). > > > > Thanks a lot for your kind help and support, > > > > Bernd > > > > > > > > Bernd Jagla > Bioinformatician > > Institut Pasteur > Plate-forme puces a ADN > Genopole / Institut Pasteur > 28 rue du Docteur Roux > 75724 Paris Cedex 15 > France > > > <mailto:[email protected]> [email protected] > > > tel: > > > <http://www.plaxo.com/click_to_call?lang=en&src=jj_signature&To=%2B33+%280%2 > 9+140+61+35+13&[email protected]> +33 (0) 140 61 35 13 > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
