Hello, The source for any of the UCSC genomic data is defined on each assembly's gateway page.
For mm9: The July 2007 mouse (Mus musculus) genome data were obtained from the Build 37 assembly by NCBI and the Mouse Genome Sequencing Consortium. Thanks, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Bernd Jagla" <[email protected]> wrote: > From: "Bernd Jagla" <[email protected]> > To: [email protected] > Sent: Friday, August 28, 2009 12:31:12 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] NCBI -> UCSC mouse genome coordinates conversion > > Hi, > > > > I found your e-mail at > http://hgdownload.cse.ucsc.edu/goldenPath/mm9/liftOver/ and was > wondering if > you could help me in translating coordinates for NCBI mouse build (37) > to > UCSC mouse (build 37). How can I tell if there are differences in the > builds > between NCBI/UCSC/ENSEMBL and how would I convert them generally. (So > I > don't have to ask you each time). > > > > Thanks a lot for your kind help and support, > > > > Bernd > > > > > > > > Bernd Jagla > Bioinformatician > > Institut Pasteur > Plate-forme puces a ADN > Genopole / Institut Pasteur > 28 rue du Docteur Roux > 75724 Paris Cedex 15 > France > > > <mailto:[email protected]> [email protected] > > > tel: > > > <http://www.plaxo.com/click_to_call?lang=en&src=jj_signature&To=%2B33+%280%2 > 9+140+61+35+13&[email protected]> +33 (0) 140 61 35 13 > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
