Hi Ricardo, Try removing the extra returns from your file in the track line. Meaning, keep it all on one line.
Th documentation around "array" formatted custom tracks is being discussed with the goal of making it more consistent. For your purposes, this track type should work fine when using the custom track submission form. Try this out and please let us know if you still have problems, Thanks, Jennifer ps. If there are still problems, send a sample file as an attachment, text format, directly to me. ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Ricardo Verdugo" <[email protected]> wrote: > From: "Ricardo Verdugo" <[email protected]> > To: [email protected] > Sent: Sunday, September 27, 2009 7:16:15 PM GMT -08:00 US/Canada Pacific > Subject: [Genome] Array custom array problem > > Hello: > > I followed the Wiki instruction s to create a custom array track but I > > get this error: > > Error Unrecognized format type=array line 2 of custom track > > This is a sample of the file (also attached): > > track type="array" expScale=6.49 expStep=1 > expNames > = > "Adrenals > ,Brown_Fat > ,Brain > ,Colon > ,Duodenum > ,Heart > ,Ileum > ,Jejunum,Kidney,Liver,Lung,Muscle,Spleen,Stomach,Testis,White_Fat" > name="Tissuesurvey16" description="Illumina Mouse-6 V1.1 R1 Expression > > Survey of 16 Mouse Tissues" > 105290026 chr10 36553035 36553085 50 + > 36553035 36553085 0 1 36553035, > > 16 > 0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15 > -6.23 > ,-6.43 > ,-4.69 > ,-6.25 > ,-6.36,-5.24,-6.3,-6.37,-6.48,-6.49,-6.47,-4.43,-6.47,-6.39,-6.46,-6.4 > 610369 chr7 117951434 117953327 50 + > 117951434 117953327 0 2 > 117951434,117953309, 16 > 0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15 > -6.13 > ,-6.3 > ,-5.89 > ,-5.37 > ,-6.01,-6.32,-5.94,-5.99,-6.22,-6.49,-6.19,-6.17,-5.77,-5.83,-6.41,-6.23 > 1450014 chr19 7399897 7399947 50 - 7399897 7399947 0 > 1 7399897, 16 > 0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15 > -6.46 > ,-6.44 > ,-6.32 > ,-6.34 > ,-6.48,-6.4,-6.39,-6.36,-6.34,-6.39,-6.31,-6.43,-6.38,-6.49,-6.25,-6.39 > 380019 chr1 196957530 196957580 50 - > 196957530 196957580 0 1 > 196957530, 16 > 0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15 > -5.04 > ,-4.33 > ,-5.88 > ,-3.57 > ,-3.26,-4.95,-3.19,-3.27,-4.77,-4.14,-5.04,-5.59,-4.61,-3.79,-6.49,-4.91 > 100430441 chr2 103103512 103103562 50 - > 103103512 103103562 0 1 > 103103512, 16 > 0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15 > -6.3 > ,-6.42 > ,-6.44 > ,-6.38 > ,-6.39,-6.39,-6.35,-6.37,-6.39,-6.27,-6.38,-6.39,-6.39,-6.36,-6.43,-6.49 > 610088 chr14 99476525 99476575 50 - > 99476525 99476575 0 1 99476525, 16 > > 0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15 > -6.29 > ,-6.31 > ,-6.28 > ,-6.49 > ,-6.27,-6.38,-6.25,-6.26,-6.39,-6.17,-6.37,-6.06,-6.22,-6.28,-5.95,-6.25 > 870181 chr9 32206438 32206488 50 + > 32206438 32206488 0 1 32206438, 16 > > 0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15 > -6.46 > ,-6.37 > ,-6.49 > ,-6.42 > ,-6.39,-6.38,-6.39,-6.47,-1.47,-6.39,-6.39,-6.48,-6.01,-6.43,-6.37,-6.45 > 103060390 chr9 40085439 40085489 50 + > 40085439 40085489 0 1 40085439, > > 16 > 0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15 > -6.44 > ,-6.44 > ,-6.24 > ,-6.43 > ,-6.41,-6.49,-6.47,-6.47,-6.39,-6.31,-5.6,-6.42,-6.42,-6.42,-6.47,-6.38 > 4480390 chr1 165187948 165187998 50 - > 165187948 165187998 0 1 > 165187948, 16 > 0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15 > -4.18 > ,-4.73 > ,-5.99 > ,-6.45 > ,-4.84,-2.73,-6.29,-5.67,-5.81,-6.49,-5.25,-2.75,-5.67,-6.22,-6.07,-4.16 > > > Thank you in advance for your assistance. > > Ricardo. > > > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > Ricardo A. Verdugo S., D.V.M. Ph.D. > Postdoctoral Fellow > Gary Churchill Group > The Jackson Laboratory > 600 Main Street, > Bar Harbor, ME 04609 > [email protected] > +1-207-288-6715 > +1-207-288-6847 Fax > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
