Good Morning EHC:
I would be curious about the version of the source you are
using. The error you mention here was fixed in the source
as of May 2008. Can you try the current source and see
if you have an error. Fetch the source from:
http://hgdownload.cse.ucsc.edu/admin/jksrc.zip
or via CVS:
http://genome.ucsc.edu/admin/cvs.html
See also: http://genome.ucsc.edu/admin/jk-install.html
and the README files in the source directory src/product/README.*
Please advise where you found the older copy of the source.
--Hiram
EHC wrote:
> Hi,
> I would like to compile the mafsInRegion program. I follow the instructions
> and manage to get up to the step where the fixcr example works.
>
> When I try to make in the I mafAddIRows directory I get the following
> message:
>
> mafAddIRows
> make[1]: *** No rule to make target `../../../lib/i386/jkhgap.a', needed by
> `mafAddIRows'. Stop.
> make: *** [all] Error 2
>
>
> I try to make again in kent/src/hg (following an previous post here
> https://lists.soe.ucsc.edu/pipermail/genome/2003-November/003529.html) and
> in all directory tree to mafAddIRows.
>
> Here is what I get in kent/src/hg:
> cd lib && make
> gcc -O -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE
> -DMACHTYPE_i386 -DJK_WARN -Wall -Werror -Wno-unused-variable -I../inc
> -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc
> -I/usr/include/mysql -o hgFind.o -c hgFind.c
> cc1: warnings being treated as errors
> hgFind.c: In function ‘searchSpecial’:
> hgFind.c:1204: warning: ‘type’ may be used uninitialized in this function
> make[1]: *** [hgFind.o] Error 1
> make: *** [hgLib] Error 2
>
>
> Not sure how to continue from here.
>
> Thanks
> EHC
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>
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