Hi EHC, How recently have you downloaded the code? Line 1204 in the latest version is this:
char *type = NULL; and function searchSpecial begins at line 2593, long after line 1204. hgFind.c contains this version line: static char const rcsid[] = "$Id: hgFind.c,v 1.222 2009/09/23 18:42:20 angie Exp $"; Does your hgFind.c have a similar line? If downloading the most recent source code and recompiling does not help (see http://genome.ucsc.edu/admin/cvs.html), please send the output of 'gcc -v'. Hope that helps, Angie ----- "EHC" <[email protected]> wrote: > From: "EHC" <[email protected]> > To: [email protected] > Sent: Wednesday, September 30, 2009 9:54:57 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] jkhgap.a alarm on OSX > > Hi, > I would like to compile the mafsInRegion program. I follow the > instructions > and manage to get up to the step where the fixcr example works. > > When I try to make in the I mafAddIRows directory I get the following > message: > > mafAddIRows > make[1]: *** No rule to make target `../../../lib/i386/jkhgap.a', > needed by > `mafAddIRows'. Stop. > make: *** [all] Error 2 > > > I try to make again in kent/src/hg (following an previous post here > https://lists.soe.ucsc.edu/pipermail/genome/2003-November/003529.html) > and > in all directory tree to mafAddIRows. > > Here is what I get in kent/src/hg: > cd lib && make > gcc -O -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE > -DMACHTYPE_i386 -DJK_WARN -Wall -Werror -Wno-unused-variable -I../inc > -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc > -I/usr/include/mysql -o hgFind.o -c hgFind.c > cc1: warnings being treated as errors > hgFind.c: In function ‘searchSpecial’: > hgFind.c:1204: warning: ‘type’ may be used uninitialized in this > function > make[1]: *** [hgFind.o] Error 1 > make: *** [hgLib] Error 2 > > > Not sure how to continue from here. > > Thanks > EHC > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
