Looking at ensembldb.ensembl.org:5306 and there on ensembl_compara_56.genome_db it seems that the genebuild of Rattus norvegicus is from March 2009. I am not an expert on the ensembl database and you might double-check this with the helpdesk but I guess you don't really need to update the gene models with each new version but only when new genebuilds are run by them.
cheers Max -- Maximilian Haussler Tel: +447542993736 http://www.ls.manchester.ac.uk/people/profile/index.asp?id=4774 On Sat, Oct 31, 2009 at 4:09 AM, Ann Zweig <[email protected]> wrote: > Hello Ed, > > The rn4 assembly has been updated with the most recent Ensembl release (v56) > and is now available on the public website. > > Regards, > > ---------- > Ann Zweig > UCSC Genome Bioinformatics Group > http://genome.ucsc.edu > > > > Ed Green wrote: >> I would like to have the current Ensembl annotation on rn4 (Ensembl 56; >> Sept. 15, 2009). It appears that the rn4 ensGene table was last updated >> July 14 2009. Could it be updated or is this something that is scheduled >> to happen? >> >> More generally, are annotation tables such as ensGene that rely on >> specific versions of other databases or annotations, themselves versioned? >> >> Thanks a ton! >> >> Best regards, >> Ed Green >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
