Good Morning Max: I only reload the predictions when they change. They are different:
$ zcat Rattus_norvegicus.RGSC3.4.56.gtf.gz | wc 725024 13430542 142122653 $ zcat Rattus_norvegicus.RGSC3.4.55.gtf.gz | wc 684323 12312896 127228592 --Hiram Maximilian Haussler wrote: > Looking at ensembldb.ensembl.org:5306 and there on > ensembl_compara_56.genome_db it seems that the genebuild of Rattus > norvegicus is from March 2009. I am not an expert on the ensembl > database and you might double-check this with the helpdesk but I guess > you don't really need to update the gene models with each new version > but only when new genebuilds are run by them. > > cheers > Max > -- > Maximilian Haussler > Tel: +447542993736 > http://www.ls.manchester.ac.uk/people/profile/index.asp?id=4774 > > > > > On Sat, Oct 31, 2009 at 4:09 AM, Ann Zweig <[email protected]> wrote: >> Hello Ed, >> >> The rn4 assembly has been updated with the most recent Ensembl release >> (v56) >> and is now available on the public website. >> >> Regards, >> >> ---------- >> Ann Zweig >> UCSC Genome Bioinformatics Group >> http://genome.ucsc.edu >> >> >> >> Ed Green wrote: >>> I would like to have the current Ensembl annotation on rn4 (Ensembl 56; >>> Sept. 15, 2009). It appears that the rn4 ensGene table was last updated >>> July 14 2009. Could it be updated or is this something that is scheduled >>> to happen? >>> >>> More generally, are annotation tables such as ensGene that rely on >>> specific versions of other databases or annotations, themselves versioned? >>> >>> Thanks a ton! >>> >>> Best regards, >>> Ed Green _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
