Hello, Installing BLAT locally and running the queries there is the best solution (as suggested by the other user). http://genome.ucsc.edu/FAQ/FAQblat thanks, Jennifer
------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Hariharan Easwaran" <[email protected]> wrote: > From: "Hariharan Easwaran" <[email protected]> > To: [email protected] > Sent: Wednesday, November 4, 2009 6:55:39 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] Help with BLAT > > Dear Madam/Sir, > I would like to BLAT a whole probe set (about 44,000 probes, Agilent) > to map it to the human genome and get the chromosomal coordinates and > corresponding genes. > However, the UCSC browser allows uploading only 25 sequences at a > time. Is there a way to upload 44000 sequences? > > I would really appreciate you help. > > Sincerely, > Hari Easwaran > Johns Hopkins University > Baltimore, MD 21231 > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
