BLAT does not support fastq, nor make any use of quality information. There exist many utilities that can extract fasta from fastq.
-Galt Yongsheng Bai wrote: > Does BLAT also take fastq format for input query, or only fasta, .nib, > .2bit...? > > > > Thanks, > > Yongsheng > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
