The kent source tree has the utilities: src/utils/faToFastq/ src/utils/fastqToFa/
Which may or may not work depending upon the type of fastq file. --Hiram ----- Original Message ----- From: "Galt Barber" <[email protected]> To: [email protected] Cc: [email protected] Sent: Wednesday, June 23, 2010 4:07:02 PM GMT -08:00 Tijuana / Baja California Subject: Re: [Genome] Fwd: Re: GenBank ID in your PNAS paper? BLAT does not support fastq, nor make any use of quality information. There exist many utilities that can extract fasta from fastq. -Galt Yongsheng Bai wrote: > Does BLAT also take fastq format for input query, or only fasta, .nib, > .2bit...? > > Thanks, > > Yongsheng _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
