Dear Xin, Ah, you need the name of the cytogenic band! You can get that via the Table Browser from the cytoBandIdeo table under Chromosome Band (under Mapping and Sequencing), or from the cytoBand file on the Downloads page (under Annotation). And if you're looking for the description to complement the gene symbol, you can find that in various places. One such place is the kgXref table under UCSC Genes. Good luck!
- Melissa On Thu, Jul 1, 2010 at 5:10 PM, <[email protected]> wrote: > Dear Melissa, > Thanks! > The attachment is the information I am looking for. > But in the omimGeneMap table, I could not find the full name of gene > symbol..... > I need the list of the full name,for example, I have the gene symbol > C19orf10,but I need the full name :chromosome 19 open reading frame 10. > And I could not generate the table including all the information I want, > only separate tables including part of those information, right? > Thank you very much > Best, > Xin > > > > > > > > > > > >> Dear Xin, >> >> The easiest ways to access the omimGeneMap data is either to go >> through the Table Browser (select the Omim Genes track under Phenotype >> and Variation, and omimGeneMap is one of the tables accessible from >> the pull-down menu under Tables), or via the Downloads page. >> >> For the chromosomal location, it sounds like you're looking for >> something other than the chromosomal coordinates. Would you send an >> example of what you're looking for? >> >> - Melissa >> >> >> On Thu, Jul 1, 2010 at 2:29 PM, <[email protected]> wrote: >>> Dear Melissa, >>> Thanks for your help! >>> How can I find omimGeneMap? Under which group? >>> I also need the chromosome location,does it in that table? >>> Thanks! >>> Best, >>> Xin >>> >>> >>>> Dear Xin, >>>> >>>> If you're interested in OMIM annotations in particular, I recommend >>>> that you look at the OMIM Genes track under the Phenotype and Disease >>>> Association group. This will get you the chromosome, TSS, and TES for >>>> genes with OMIM annotations. The related table omimGeneMap will also >>>> give you the gene symbol, and information on the disorders associated >>>> with the gene under OMIM. >>>> >>>> Let us know if you need any further help. >>>> >>>> Cheers, >>>> >>>> Melissa >>>> >>>> On Wed, Jun 30, 2010 at 11:21 AM, <[email protected]> wrote: >>>>> To whom it may concern, >>>>> I am a phd student in the statistics department of uw-madison. >>>>> I have a problem about the human_hg18 gene list. >>>>> I need to use human_hg18 gene list, including information of >>>>> chromosome ,TSS, TES, OMIM, Chromosomal.Location, gene symbol, gene >>>>> title >>>>> transcript ID (you could see the detail in the attachment, I need to >>>>> have >>>>> all the gene annotation to generate my table ). >>>>> However, I do not know how to generate such gene list, I could just >>>>> generate gene table including some of those information, and I could >>>>> not >>>>> find any tables including chromosome location and gene title >>>>> information. >>>>> Could you tell me how I can get such kind of gene list? >>>>> Thanks so much. >>>>> >>>>> Best, >>>>> Xin >>>>> >>>>> >>>>> _______________________________________________ >>>>> Genome maillist - [email protected] >>>>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>>>> >>>>> >>>> >>> >>> >>> >> > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
