Great. Thank you, Brooke. -Mike ----- Original Message ----- From: "Brooke Rhead" <[EMAIL PROTECTED]> To: "Michael Chou" <[EMAIL PROTECTED]> Cc: <[email protected]> Sent: Sunday, November 09, 2008 4:13 PM Subject: Re: [Genome] Liftover chain file question
> Hello Mike, > > The file you are looking for: > > hg17ToHg18.over.chain.gz > > is in the hg17 directory, located here: > > http://hgdownload.cse.ucsc.edu/goldenPath/hg17/liftOver/ . > > > -- > Brooke Rhead > UCSC Genome Bioinformatics Group > > > > Michael Chou wrote: >> Hi - >> >> I want to convert Human Hg17 coordinates to Hg18 on my local machine, >> but I can only find >> >> hg18ToHg17.over.chain.gz >> >> in the directory: >> >> http://hgdownload.cse.ucsc.edu/goldenPath/hg18/liftOver/ >> >> Can this file be used to go either way? If so, can you tell me what >> parameters >> to Liftover are needed, or if there is better documentation than what I get >> from running liftover without command line arguments? >> >> Thanks, >> Mike Chou >> PhD Candidate >> Church Lab >> Harvard Medical School >> >> >> >> _______________________________________________ >> Genome maillist - [email protected] >> http://www.soe.ucsc.edu/mailman/listinfo/genome >> > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
