Hello Mike, The file you are looking for:
hg17ToHg18.over.chain.gz is in the hg17 directory, located here: http://hgdownload.cse.ucsc.edu/goldenPath/hg17/liftOver/ . -- Brooke Rhead UCSC Genome Bioinformatics Group Michael Chou wrote: > Hi - > > I want to convert Human Hg17 coordinates to Hg18 on my local machine, > but I can only find > > hg18ToHg17.over.chain.gz > > in the directory: > > http://hgdownload.cse.ucsc.edu/goldenPath/hg18/liftOver/ > > Can this file be used to go either way? If so, can you tell me what parameters > to Liftover are needed, or if there is better documentation than what I get > from running liftover without command line arguments? > > Thanks, > Mike Chou > PhD Candidate > Church Lab > Harvard Medical School > > > > _______________________________________________ > Genome maillist - [email protected] > http://www.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] http://www.soe.ucsc.edu/mailman/listinfo/genome
