Mariam,
It appears that the sequence you defined does not exist in
the interval you name. To find the occurrences, go to the
interval and turn on the Short Match track. Click the
little mini-button to the left of the track in the image
and on the configuration page, type or copy your sequence
into the box. You will see that the sequence does not
appear in the reference sequence in your interval.
best wishes,
--b0b kuhn
ucsc genome bioinformatics group
On Mon, 17 Nov 2008 18:40:48 -0600
"Nersisyan, Mariam (UMKC-Student)" <[EMAIL PROTECTED]>
wrote:
> Dear Mr/Mrs
>
> I'm trying to use Genome Browser (GB) in order to
>search for a specific DNA sequence in certain genes. As
>GB has an extended case/color options that helps to color
>UCSC genes, Human mRNAs, SNP etc, I was wondering whether
>it's possible to color new searchable terms defined by
>the user.
>For example if I want to check whether AGATACGATCAGCATC
>sequence is present somewhere in chr1:151072054-151384976
>, it'll be much easier for me to see that sequence if
>it's somehow colored. So I was wondering if it's possible
>to input the sequence AGATACGATCAGCATC, define the color
>and see that sequence (or it's multiple occurrences)
>colored in the output. Thanks in advance!
>
> Mariam Nersisyan
>
> _______________________________________________
> Genome maillist - [email protected]
> http://www.soe.ucsc.edu/mailman/listinfo/genome
_______________________________________________
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http://www.soe.ucsc.edu/mailman/listinfo/genome
