Good Morning Wang Wuqi:
Thank you for bringing this error to our intention. We can fix
this in the makefiles.
For your work-around, after your 'make install' step, go to
the directory in the source tree:
src/hg/hgNear
and run the two commands:
$ rsync -ar --exclude=CVS/ --exclude=.svn/ --delete hgGeneData \
${DESTDIR}${CGI_BIN}/hgGeneData/
$ chmod -R a+rX ${DESTDIR}${CGI_BIN}/hgGeneData
And in the directory:
src/hg/near/hgNear
and run the two commands:
$ rsync -ar --exclude=CVS/ --exclude=.svn/ --delete hgNearData
${DESTDIR}${CGI_BIN}/
$ chmod -R a+rX ${DESTDIR}${CGI_BIN}/hgNearData
We are adding those two commands to those makefiles to fix this problem.
--Hiram
WANG Wuqi wrote:
> Hi Brooke Rhead,
>
> We download new jksrc packages and upgrade our GBrowser(version 196)
> Depending on instruct document "README.building".
> After building the CGI binaries, we found to lack some files
> in /var/www/cgi-bin, like directories /hgGeneData, /hgNearData and so
> on.
>
> We found below 2 errors so far:
> ----------------------------------
> (1) Can not find genome.ra for taskbar "UCSC Genes" in assembly 'human'
> see attachment page 1
> (2) For link
> http://ucsc.gis.a-star.edu.sg/cgi-bin/hgGene?hgg_gene=uc004eeg.1&hgg_pro
> t=P49335&hgg_chrom=chrX&hgg_start=82649940&hgg_end=82651431&hgg_type=kno
> wnGene&db=hg18&hgsid=1647
>
> see attachment page 2
>
> By the way, old version cgi-bin works fine, so it is rolled back now.
>
>
> Thanks & regards
>
> Wuqi
_______________________________________________
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